Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45290 189 / 8e-53 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035680 [exp] 795 / 0 AT5G45290 343 / 1e-111 RING/U-box superfamily protein (.1.2) Lus10030117 [exp] 69 / 8e-12 AT5G45290 155 / 5e-41 RING/U-box superfamily protein (.1.2) Lus10001683 [exp] 68 / 8e-12 AT5G45290 155 / 4e-41 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G127100 [exp] 490 / 9e-168 AT5G45290 286 / 2e-89 RING/U-box superfamily protein (.1.2) Potri.003G106600 [exp] 458 / 4e-155 AT5G45290 320 / 4e-102 RING/U-box superfamily protein (.1.2) Potri.018G114700 [exp] 73 / 2e-13 AT5G45290 131 / 2e-32 RING/U-box superfamily protein (.1.2) Potri.006G190500 [exp] 66 / 4e-11 AT5G45290 150 / 3e-39 RING/U-box superfamily protein (.1.2) Potri.014G053500 [exp] 55 / 1e-07 AT5G45290 134 / 4e-34 RING/U-box superfamily protein (.1.2) Potri.002G140500 [exp] 52 / 6e-07 AT5G45290 119 / 1e-28 RING/U-box superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037267 pacid=23152518 polypeptide=Lus10037267 locus=Lus10037267.g ID=Lus10037267.BGIv1.0 annot-version=v1.0 ATGGGGTCCCGTGGAAGCAAACCTTCTTCCGGGAGCGCTTCTTCTTCTTCCCGAACCGGTGAACAGAGGAAATGTACAAGTAAGGGGAGCAGGGTTTTCC ATTCTGGCTGTCTTGGACGGCCTTCCAGGTCCCGCCAATCCTGCACCGATGATCATGTGAGTGAGTATGGGAGTAAAGATGATGAACATGAAGCTTCATC AGCTAATCCAGCAGATGAGAGTCGGGTTAAAGTTGAAGGATATGAAAATGCTAAGGTTGATCAGTCTGAGGATATGGCGTGTGTGTCTTCCGAGTCTGAT CAGTTTGAGTGGAGTCAAGCAAGTATAACGAATACTGCTTCTGGAATTGGCAGCAGCTCCGGACGTGCTGTTCCCAACCAATCCTTGACATCTCCGAATA GTAGCTTCCTTTCTCGTTTTAGCTTTATTCCTGGAAATGTGAGTGTCAGGCTTAGCAGAGCAACAAGCTTAGGGTCTTCAAGGGCTTATCCTGTTCCTTC ACCAATTTTGAGAATGTCGAATGATGAAGAAGAGATTTCTGCCCATCCGGTTTCTGCCAGTGGGATGATTGTTGGTGATGAGTCTCGACAAGTTTGTGAT ATTATGCCTACTTCTCGGGTAGCTAGGACTTTAACACAGTGCACTGGACGATCCCCTGCGAGATTTAGAACTAATAGTCAAATATATGGCTCTTTGCAAA ATGTGCAAGCCGACCGTGTAGTTCCCTTGGATGAATATAGTACCAGAAACGAGAGTAGGAATCTGGTATGGGTGGATGGAGACTTGCATTCGCGGAGGTT TCTAAATAATTTGGATAATATTGAGTCCCGAGTTTTCGATAGGCGAACAGCAGCACGAGAACCAGTTGAACGAAATGTTCGGTTTAGCAGGACTTTGAGC GTTGGAAGACTTCGTGATAGAGTTCTTCGTCGATCTTCGTTATCTGATATGTCATTTTGTCCTTTACAACAAGACAGAGAAGTAATAGATGTTGGTCGAG GCGATAGAGGACAGCGGTTGGGTGGTGAGGCTAGAGCAGTAGAAACCGAGCTTGGTGTACTGCCAGCCTATCCACAGGCACTGTCTTCTGAAGATCGTTC ATCAGGCATGCCTAACTCCTTGTTTGGCATTCAGGATCGTGAAGTAGAAACATCACGGTCAAGAGAAGCTAGGTATCATGACTTACTTGAACATAGGTCT AATTTCCTCGAAAGAAGGAGACGAATACGATCTCAGGTCCGTGCTCTGCAGAGGTTAGGAAGCCGTTTTGAGAATTTGTCTGTACATGAGAGGTCTTGTA TTTTATCCGGTCAACATAGAGCAGGTCATTGTACTTGTCGCGTAAATAATCCTGATGCCAATGTAAATGATGACACAAGTGCCAGAGCTAGCATATCAAG AATTGTCATGTTAGCTGAAGCTCTATTTGAGGTTCTGGATGAAATCCATCAGCAATCTGTTGTATTATCTTCTCGGCGTTCCGTGTCTTCACTAGGGTCC GTGCCGGCACCAAACGAAGTTGTGGCATCTCTACCTGTCAAGCTGTACACCAAATTGCAAAAACATCAGAATGATGAGGAAGCACATATGAGGAAGGAGA GTGCATCCGGGTACTGCCTTGTCATCATGAATTTCATAGAGCCTGCATCGATAAGTGGCTCACAGAGATTCACAGGAGCTCGATGGAGAAACCGTGTGAC TATAACTAATTATGGCCAGGTGGCCGGAAGTTTGACGGGCTCTCGATTACAAATCAGCATCTCGGCGTCGGCGGGAGGTGGCGGTGGTGGCCACGGAATG AACTAA
AA sequence Show only first row Show all	>Lus10037267 pacid=23152518 polypeptide=Lus10037267 locus=Lus10037267.g ID=Lus10037267.BGIv1.0 annot-version=v1.0 MGSRGSKPSSGSASSSSRTGEQRKCTSKGSRVFHSGCLGRPSRSRQSCTDDHVSEYGSKDDEHEASSANPADESRVKVEGYENAKVDQSEDMACVSSESD QFEWSQASITNTASGIGSSSGRAVPNQSLTSPNSSFLSRFSFIPGNVSVRLSRATSLGSSRAYPVPSPILRMSNDEEEISAHPVSASGMIVGDESRQVCD IMPTSRVARTLTQCTGRSPARFRTNSQIYGSLQNVQADRVVPLDEYSTRNESRNLVWVDGDLHSRRFLNNLDNIESRVFDRRTAAREPVERNVRFSRTLS VGRLRDRVLRRSSLSDMSFCPLQQDREVIDVGRGDRGQRLGGEARAVETELGVLPAYPQALSSEDRSSGMPNSLFGIQDREVETSRSREARYHDLLEHRS NFLERRRRIRSQVRALQRLGSRFENLSVHERSCILSGQHRAGHCTCRVNNPDANVNDDTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRRSVSSLGS VPAPNEVVASLPVKLYTKLQKHQNDEEAHMRKESASGYCLVIMNFIEPASISGSQRFTGARWRNRVTITNYGQVAGSLTGSRLQISISASAGGGGGGHGM N

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45290			RING/U-box superfamily protein...		Lus10037267 [exp]	0	1
AT3G01810			unknown protein		Lus10015805 [exp]	1.0	0.9735
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10037888 [exp]	3.0	0.9275
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Lus10036621 [exp]	3.5	0.9461
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10016091 [exp]	5.3	0.9251
AT1G22060			unknown protein		Lus10037927 [exp]	5.9	0.9185
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10033792 [exp]	7.5	0.9153
AT5G42710			unknown protein		Lus10010806 [exp]	8.8	0.9203
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Lus10035838 [exp]	9.5	0.9055
AT2G23360			Plant protein of unknown funct...		Lus10004994 [exp]	13.0	0.9224
AT1G29170		ATSCAR3, WAVE2	WASP \(WISKOTT-ALDRICH SYNDROM...		Lus10001897 [exp]	13.5	0.8982

Compare expression of checked genes

Lus10037267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.