Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11340 447 / 9e-155 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT3G55700 429 / 3e-147 UDP-Glycosyltransferase superfamily protein (.1) AT5G05860 427 / 6e-147 UGT76C2 UDP-glucosyl transferase 76C2 (.1) AT5G05880 420 / 5e-144 UDP-Glycosyltransferase superfamily protein (.1) AT5G05870 411 / 3e-140 UGT76C1 UDP-glucosyl transferase 76C1 (.1) AT3G55710 406 / 3e-138 UDP-Glycosyltransferase superfamily protein (.1) AT5G05900 387 / 4e-131 UDP-Glycosyltransferase superfamily protein (.1) AT5G05890 380 / 2e-128 UDP-Glycosyltransferase superfamily protein (.1) AT5G59580 342 / 2e-113 UGT76E1 UDP-glucosyl transferase 76E1 (.1) AT3G46670 341 / 4e-113 UGT76E11 UDP-glucosyl transferase 76E11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004672 [exp] 628 / 0 AT3G11340 417 / 1e-142 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10004671 [exp] 526 / 0 AT3G55700 450 / 4e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10040246 [exp] 476 / 1e-165 AT3G11340 488 / 3e-171 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10040725 [exp] 387 / 9e-131 AT5G59590 408 / 9e-140 UDP-glucosyl transferase 76E2 (.1) Lus10016460 [exp] 370 / 3e-124 AT5G59590 400 / 2e-136 UDP-glucosyl transferase 76E2 (.1) Lus10016461 [exp] 367 / 6e-123 AT3G11340 381 / 3e-129 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10016459 [exp] 341 / 1e-112 AT5G59590 357 / 3e-119 UDP-glucosyl transferase 76E2 (.1) Lus10035681 [exp] 266 / 4e-88 AT3G11340 191 / 5e-60 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10024584 [exp] 248 / 1e-76 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G195600 [exp] 504 / 1e-176 AT3G55700 515 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195300 [exp] 494 / 5e-173 AT3G11340 485 / 6e-170 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195500 [exp] 490 / 2e-171 AT3G11340 483 / 3e-169 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.001G245900 [exp] 386 / 1e-130 AT3G46660 452 / 7e-157 UDP-glucosyl transferase 76E12 (.1) Potri.006G039300 [exp] 340 / 3e-112 AT5G59590 347 / 2e-115 UDP-glucosyl transferase 76E2 (.1) Potri.009G039100 [exp] 289 / 1e-88 AT3G09360 412 / 7e-134 Cyclin/Brf1-like TBP-binding protein (.1) Potri.005G073800 [exp] 273 / 3e-86 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073766 [exp] 273 / 3e-86 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.007G095000 [exp] 269 / 1e-84 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.001G313000 [exp] 267 / 4e-84 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10037268 pacid=23152495 polypeptide=Lus10037268 locus=Lus10037268.g ID=Lus10037268.BGIv1.0 annot-version=v1.0 ATGGACCATTTTAGGGCTAACTTAAAAGAGCTCCATATTCGGCAAAAGAAAGCCCGCCGGCTCTTGCTCTTTCCATTACCAGCTCAAGGTCACATAACCC CTATGCTTCAGCTTGCAAACATCCTCTACTCCAGAGGATTCGCCATCACCATAATGCACACCAGCTTCAACGCTCCCAACCCATCCAATTACCCGGATTT CAACTTCCACTCAATCCACATCAGCTCATTGGAGGCCAATGAAGTCGAAGTCTCCACTACTGGAGTTACAGATGTTATAGCTCTTCTCACCTCCCTCAAT ATCACTTTTGTTAATCCGTTCAAGGAAGCCTTAAGACAGTTGATATTAGAAAGCTTGCAGGAAGAGGAGCCTGTCACTTGCCTCATTACCGATGCTGATT GGCACTTCACACAGGAGGTTGCTGATAGTCTCCGACTCTCCAGGATTGTGCTTAGAACCAGCAATGTTTCTTCTTTCCTTGCTTATGAACCCCTTCCATT GTTCTACGAAAAAGGTTACCTTCCTGTCCAAGCCTGCAGAGCAGATGAAGAAATCCCAGAGTTCCCACCACTGAAAGCCAAGGATCTCCCACAAGTCGAG ACACAAAGAAAAGATGATATGTTGCATCTGGTAGATAGCATGATGAGGACAATCAAAGCCTCAGCAGGGCTCATATGGAACACCAGTCAAGACTTGGAAC ACTCCAACCTGCTAAAAAGCTCTAAACTATTCAAAGTCCCCAATTTCGCTTTGGGGCCTTTCCACAAACACTTTCCGTGCATCTCAAAGAGCAGCCTGCT CGGAGAGGATCTCACCTCAATTCCCTGGCTAAACAGCAATCAAGCACCAAGATCAGTTCTTTACATCAGCTTCGGCAGCATCGCAACGGTAACAGAGGCC GAAGCGCTGGAGATCGCTTGGGGGATCGTCAACAGCCAGCAGCCATTCCTATGGGTAGTTCGACCGAAATCAGTGGAGAATTCCGAATGGATCGAGTTCT TACCTGAAGAGTTCCATCGGGCGGTGGCCGGTAAAGGGCACATCGTGAGATGGGCTCCACAGGAGGAGGTGCTGGCGCATCCGTCGACGGGAGCGTTCTG GACGCACTGCGGATGGAACTCGATATTGGAGGGCATCTGCAAAGGAGTGCCGATGATTTGTGCGCCGAGCTTTGGCGACCAGTTGGTGAATGCGAGGTAC GTGAGCGATGTTTGGAAGGTGGGGATACACTTGGAAGGGAAGGTGGAGAGAGGAGTGATCGAGAGAGCTGTAAAGAAATTAATGGTGGATGGTGGAGAGG GTGAGGAGATTAGGGCAAGAGTTGGGGATCTGAAGGAGAAAATGGAAGTCTGTGTGAAGATTGGAGGATCGTCGTATGAAGCTGTTGATCAGTTGGTTCA CCATATTTTGGGATTCTGTATTTCTGGTGGTGGGGAGGCCAGTAACTGA
AA sequence Show only first row Show all	>Lus10037268 pacid=23152495 polypeptide=Lus10037268 locus=Lus10037268.g ID=Lus10037268.BGIv1.0 annot-version=v1.0 MDHFRANLKELHIRQKKARRLLLFPLPAQGHITPMLQLANILYSRGFAITIMHTSFNAPNPSNYPDFNFHSIHISSLEANEVEVSTTGVTDVIALLTSLN ITFVNPFKEALRQLILESLQEEEPVTCLITDADWHFTQEVADSLRLSRIVLRTSNVSSFLAYEPLPLFYEKGYLPVQACRADEEIPEFPPLKAKDLPQVE TQRKDDMLHLVDSMMRTIKASAGLIWNTSQDLEHSNLLKSSKLFKVPNFALGPFHKHFPCISKSSLLGEDLTSIPWLNSNQAPRSVLYISFGSIATVTEA EALEIAWGIVNSQQPFLWVVRPKSVENSEWIEFLPEEFHRAVAGKGHIVRWAPQEEVLAHPSTGAFWTHCGWNSILEGICKGVPMICAPSFGDQLVNARY VSDVWKVGIHLEGKVERGVIERAVKKLMVDGGEGEEIRARVGDLKEKMEVCVKIGGSSYEAVDQLVHHILGFCISGGGEASN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10037268 [exp]	0	1
AT1G11380			PLAC8 family protein (.1)		Lus10002586 [exp]	1.0	0.9678
AT3G06240			F-box family protein (.1)		Lus10001105 [exp]	1.4	0.9663
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10016998 [exp]	2.0	0.9542
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10029137 [exp]	3.2	0.9539
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10013026 [exp]	4.2	0.9585
					Lus10039350 [exp]	4.6	0.9375
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10041897 [exp]	7.5	0.9194
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10036296 [exp]	7.5	0.9498
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Lus10020908 [exp]	8.8	0.9499
AT4G36740	HD	HB-5, ATHB40	homeobox protein 40 (.1)		Lus10041719 [exp]	8.8	0.9406

Compare expression of checked genes

Lus10037268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.