Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19420 549 / 0 Pectinacetylesterase family protein (.1.2) AT4G19410 459 / 2e-159 Pectinacetylesterase family protein (.1.2) AT5G45280 444 / 1e-153 Pectinacetylesterase family protein (.1.2) AT2G46930 414 / 3e-141 Pectinacetylesterase family protein (.1) AT3G62060 410 / 1e-139 Pectinacetylesterase family protein (.1) AT5G26670 407 / 2e-138 Pectinacetylesterase family protein (.1.2) AT1G57590 405 / 2e-137 Pectinacetylesterase family protein (.1) AT3G05910 401 / 3e-136 Pectinacetylesterase family protein (.1.2) AT5G23870 372 / 6e-125 Pectinacetylesterase family protein (.1.2.3) AT3G09410 365 / 5e-122 Pectinacetylesterase family protein (.1.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035682 [exp] 786 / 0 AT4G19420 556 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10034767 [exp] 632 / 0 AT4G19420 574 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033305 [exp] 630 / 0 AT4G19420 572 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10034766 [exp] 565 / 0 AT4G19420 508 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033304 [exp] 485 / 6e-169 AT4G19420 392 / 2e-134 Pectinacetylesterase family protein (.1.2) Lus10033301 [exp] 455 / 8e-158 AT5G45280 546 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10007200 [exp] 402 / 2e-136 AT3G62060 585 / 0.0 Pectinacetylesterase family protein (.1) Lus10009966 [exp] 400 / 6e-136 AT3G62060 613 / 0.0 Pectinacetylesterase family protein (.1) Lus10038024 [exp] 400 / 7e-136 AT3G62060 610 / 0.0 Pectinacetylesterase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G234100 [exp] 581 / 0 AT4G19420 597 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.004G233900 [exp] 472 / 2e-164 AT5G45280 567 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.003G046200 [exp] 453 / 7e-157 AT5G45280 541 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.013G000900 [exp] 412 / 1e-140 AT3G05910 629 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.005G001500 [exp] 411 / 4e-140 AT3G05910 602 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.014G110900 [exp] 411 / 2e-139 AT3G62060 611 / 0.0 Pectinacetylesterase family protein (.1) Potri.010G004400 [exp] 400 / 1e-135 AT5G26670 559 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.006G084900 [exp] 380 / 7e-128 AT3G09410 570 / 0.0 Pectinacetylesterase family protein (.1.3) Potri.012G142300 [exp] 374 / 8e-126 AT5G23870 511 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.015G145400 [exp] 370 / 1e-124 AT5G23870 509 / 0.0 Pectinacetylesterase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03283 [flax] [poplar] PAE Pectinacetylesterase
Representative CDS sequence Show only first row Show all	>Lus10037269 pacid=23152611 polypeptide=Lus10037269 locus=Lus10037269.g ID=Lus10037269.BGIv1.0 annot-version=v1.0 ATGGGGGAGACGAGATTATTCGAGTTAAGGAAATGGTCCAGTATCTTTCTGTCCTTTGTTCTGTATTTGATATGCACAACTGAAGGCCTTTATGCTCCAA TTACGTATGTGACCAGTGGCATTGCAAAAGGAGCTGTTTGCTTGGATGGAAGCCCGCCGGCTTACAACTTTGATGAAGGCTATGGAACTGGGATCAATAA TTGGTTAATTCAACTTGAGGGAGGAGGATGGTGCAACAATGTCACTTCTTGTCTTGCTCGTAAGAACACTCGTTTAGGTTCGTCCAAGCAAATGGGAAAC CAGTTAGCCTTTTCTGGAATCATGAGCAATAGGCACGGATTTAATCCAGATTTCTACAATTGGAACAGAGTTAAGATGAGATATTGTGACGGATCATCTT TCACCGGTGACGTAGAAGCAGTAAATCCTGAAACCAAGCTTCACTACAGAGGAGCAAGGGTTTGGCTTGCTGTTATGGAGGATCTTCTAGCCAAAGGGAT GAGAAATGCCGAAAATGCAATACTTTCGGGATGTTCAGCTGGTGGCCTGGCTTCTATTTTGCATTGTGATAGCTTCAGAGCTCTTCTGCCTATGGGTACT AAAGTGAAATGCCTTTCGGATGCTGGCTATTTCATCAGTGTGAAAGATATTGCAGGAGAACACCACATTGAAGCCTATTTCAACCAAGTGGTTTCCTTAC ATGGATCAGTAAAGAATTTGCCTGCATCGTGTACCAGAAGTACTTCAACACCATCAATGAATGTCATTCAACAAGTTCGAACTCCGATTTTCCTTCTCAA CGCTGCATACGATTCATGGCAGATAAGGAACATCTTGGCTCCAGCTGATGCCGATCCCCGTGGCTCCTGGAACGCCTGCAAGCTTAGCATAAGCAATTGC TCACCTCTTCAGCTCAAAACATTGCAAGCATTCAGGACGGAGTTCTTGAATGCATTGCCGAGATCTGCAGATTCATTAGCGAGGGGAGTATACATAGACT CCTGCTATGCTCATTGCCAAACTGAATTCCAGGAAACCTGGTACATGCCAGATTCCCCTGCTATTAGTCAAACTAAAATAGCGACAGCAGTAGGAGAATG GTTTTACGACAGAGCTCCATTCCAAAAGGTTGATTGTCCTTACCCATGCAACCCGACTTGTCGTGCACCTGGTAGAGATATTGGCCATGGTGGACTGGTT CCGATTCTCCCAAATATAGCCCTCTGCGGCAGTTACTCTTCCCTTCCGCTTGTAACCGCCGCTTGCTGTTGTCCCGTGTCATTCCTGGACCGACGTTGCC TACTCCCTGGCCTATTGTTGATGGTCGGAGTCGTTGGTTCTAACAGATTTTGTCGATCTCGGTTGTGTGCCGTTCCAGGGTTATCCGACATTCCGTCCGC TTGTGGATGTGCATGCTCCAACACAAGGAAATTCTCCTTGTCAATTCTTCGACCTTACCAACTTGGAGCGGTTACTTGTGGGAAACGTATTCTCCGGCCT CTGATGTTTGCTCTACAACGTCGTCTCTTCATCGTGGTCTGCTTTATGTCGAAGACTCTATGTCTTCTCCGGCAGGGTGGTTCACGTCTGAAAAGCTAG
AA sequence Show only first row Show all	>Lus10037269 pacid=23152611 polypeptide=Lus10037269 locus=Lus10037269.g ID=Lus10037269.BGIv1.0 annot-version=v1.0 MGETRLFELRKWSSIFLSFVLYLICTTEGLYAPITYVTSGIAKGAVCLDGSPPAYNFDEGYGTGINNWLIQLEGGGWCNNVTSCLARKNTRLGSSKQMGN QLAFSGIMSNRHGFNPDFYNWNRVKMRYCDGSSFTGDVEAVNPETKLHYRGARVWLAVMEDLLAKGMRNAENAILSGCSAGGLASILHCDSFRALLPMGT KVKCLSDAGYFISVKDIAGEHHIEAYFNQVVSLHGSVKNLPASCTRSTSTPSMNVIQQVRTPIFLLNAAYDSWQIRNILAPADADPRGSWNACKLSISNC SPLQLKTLQAFRTEFLNALPRSADSLARGVYIDSCYAHCQTEFQETWYMPDSPAISQTKIATAVGEWFYDRAPFQKVDCPYPCNPTCRAPGRDIGHGGLV PILPNIALCGSYSSLPLVTAACCCPVSFLDRRCLLPGLLLMVGVVGSNRFCRSRLCAVPGLSDIPSACGCACSNTRKFSLSILRPYQLGAVTCGKRILRP LMFALQRRLFIVVCFMSKTLCLLRQGGSRLKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19420			Pectinacetylesterase family pr...		Lus10037269 [exp]	0	1
AT4G19420			Pectinacetylesterase family pr...		Lus10035682 [exp]	1.7	0.9546
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Lus10018084 [exp]	4.7	0.9312
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10003269 [exp]	4.7	0.9532
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10013263 [exp]	4.9	0.9454
AT3G17152			Plant invertase/pectin methyle...		Lus10037793 [exp]	8.4	0.9336
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10015892 [exp]	9.5	0.9429
AT5G58800			Quinone reductase family prote...		Lus10005862 [exp]	11.0	0.9379
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Lus10026700 [exp]	11.5	0.9383
AT5G05130			DNA/RNA helicase protein (.1)		Lus10027296 [exp]	14.7	0.9436
AT2G43400		ETFQO	electron-transfer flavoprotein...		Lus10027045 [exp]	14.9	0.9467

Compare expression of checked genes

Lus10037269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.