Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31730 1264 / 0 Adaptin family protein (.1) AT1G60070 231 / 8e-64 Adaptor protein complex AP-1, gamma subunit (.1.2) AT1G23900 211 / 5e-57 GAMMA-ADAPTIN 1, GAMMA-AD, GAMMA-ADR, GAMMA-ADAPTIN1 gamma-adaptin 1 (.1.2) AT5G22770 190 / 2e-49 ALPHA-ADR alpha-adaptin (.1.2.3) AT5G22780 189 / 2e-49 Adaptor protein complex AP-2, alpha subunit (.1) AT1G48760 113 / 2e-25 PAT4, DELTA-ADR PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) AT1G23940 75 / 1e-13 ARM repeat superfamily protein (.1) AT4G31490 61 / 5e-09 Coatomer, beta subunit (.1) AT4G31480 60 / 7e-09 Coatomer, beta subunit (.1.2) AT5G11490 46 / 0.0001 adaptin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035683 [exp] 1655 / 0 AT1G31730 1343 / 0.0 Adaptin family protein (.1) Lus10037272 [exp] 1623 / 0 AT1G31730 1341 / 0.0 Adaptin family protein (.1) Lus10035684 [exp] 1546 / 0 AT1G31730 1312 / 0.0 Adaptin family protein (.1) Lus10012988 [exp] 223 / 5e-61 AT1G60070 1397 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10029177 [exp] 214 / 4e-58 AT1G60070 1389 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10020522 [exp] 196 / 2e-51 AT5G22780 1689 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10005371 [exp] 194 / 9e-51 AT5G22780 1679 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10043363 [exp] 194 / 1e-50 AT5G22780 1659 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10019520 [exp] 193 / 2e-50 AT5G22780 1672 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G235200 [exp] 1387 / 0 AT1G31730 1392 / 0.0 Adaptin family protein (.1) Potri.016G104700 [exp] 236 / 2e-65 AT1G60070 1329 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.006G092800 [exp] 234 / 8e-65 AT1G60070 1356 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.004G189700 [exp] 199 / 2e-52 AT5G22770 1659 / 0.0 alpha-adaptin (.1.2.3) Potri.009G150300 [exp] 191 / 4e-50 AT5G22780 1640 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Potri.015G045600 [exp] 111 / 8e-25 AT1G48760 870 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.012G055000 [exp] 109 / 4e-24 AT1G48760 815 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.018G007400 [exp] 65 / 2e-10 AT4G31480 1672 / 0.0 Coatomer, beta subunit (.1.2) Potri.006G273300 [exp] 59 / 2e-08 AT4G31480 1657 / 0.0 Coatomer, beta subunit (.1.2) Potri.004G153500 [exp] 44 / 0.0005 AT4G34450 1513 / 0.0 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01602 [flax] [poplar] Adaptin_N Adaptin N terminal region
Representative CDS sequence Show only first row Show all	>Lus10037271 pacid=23152531 polypeptide=Lus10037271 locus=Lus10037271.g ID=Lus10037271.BGIv1.0 annot-version=v1.0 ATGGGCTCCCAAGGCGGAATCGGCCAATCGAAGGAGTTCCTTGATCTGGTCAAGTCAATCGGCGAAGCCCGATCGAAGGCTGAGGAGGACCGTATAATCC TCCGGGAAATCGAAACTCTAAAGCGACGCCTCGTCGAACCTGGAATCCCCAAGCGCAAGATGAAGGAATACATTATGCGGTTGGTGTACGTGGAGATGCT CGGCCACGATGCTTCCTTTGGGTACATTCATGCCGTCAAAATGACACACGACGACCATTTGTTCCTCAAGCGGACGGGTTACTTGGCGGTCACTCTCTTC CTCAATGAAGATCACGATTTGATCATCTTGATTGTCAACACCATTCAGAAGGACTTGAAATCTGACAACTTTCTGATCGTGTGCGCTGCATTGAATGCGG TCTGTAAATTGATCAACGAGGAGACGATACCTGCTGTTTTGCCTCAAGTAGTGGAATTATTGGGCCATCAGAAGGAGGCTGTTAGAAAGAAGGCTATCAT GGCTCTCCATCGCTTCTACCAGAAGTCTCCTTCCTCTGTTTCTCATCTCATTTCCAACTTCCGAAAGAGGCTATGTGATAATGATCCTGGTGTCATGGGT GCAACACTTTGTCCTCTTTTTGATCTTATCAGTAGAGATGCTAGCTCATTTAAGGATTTGGTGGTCAGCTTTGTAAGCATTCTTAAACAAGTAGCTGAAC ATAGGTTGCCGAAAACTTACGATTATCATCAGATGTCAGCTCCATTCGTACAGATTAGGTTGCTGAAAATTTTGTCACTTCTTGGAAGCGGTGATAAACA TGCAAGCGAGCAGATGTACACTGTTGTTGGTGATATATTGAGGAAGTGTGATTCATCAAGCAATATAGGAAATGCTGTACTCTATGAATGTGTATGCTGT GTATCTTCAATGCATCCTAGTCCTAAGTTGTTGGAATCTGCGGCAGATGTAATAGCAAGATTTTTAAAGAGTGACAGCCATAATCTGAAGTATTTGGGCA TAGACGCGCTCTGTCGATTGATAAAATTGAGTCCAGAGATAGCAGAAAAACACCAGCTGGCTGTGATAGATTGCTTAGAGGACCCAGATGATACCCTAAA GCGAAAAACTTTTGAGCTGCTGCTCAAAATGACGAAGTCATCCAATGTGGAAGTGATTATTGACCGCATGATTGATTACATGATTAGCATAAATGACAAT CATTACAAAACCGATATTGTATCTCGATGTGTTGAACTTGCAGAGCAATTTGCACCAAGCAACCAATGGTTTATTCAGACCATGAACAGAGTCTTTGAAC ATGCTGGAGATCTTGTAAACATTAAGGTAGCCCACAACTTGATGCGCTTAATTGCTGAAGGATTTGGCGAAGATGATGATACTGCAGATACTCACCTTAG ATCATCAGCTGTGGAGTCATATTTACGAATTATAGGAGCACCAAAGCTGCCATCCGTTTTTCTTCAAGTTATTTGCTGGGTGTTGGGTGAATTTGGGACA GCTGATGGAAAGTATTCTGCATCGTATATTACTGGGAAGTTGTGTGATGTAGCTGAGGCATACTCAGATGATGAACCTGTCAAGGGTTATGCTATGACAG CACTCATGAAGATATATGCCTTTGAGATGGCTGCTGGTAGAAAAGTGGACGTGCTACCTGAGTGTGAAACGTTGATTGAAGAATTGTCAGCTTCCCACTC AAGTGACTTGCAGCAGCGTGCATATGAACTCCAAGCAGTCCTTGCCCTAGATGCCCAAGCTATTCAAAACATCATGCCATCAGACGCAAGCTGTAGAGAG ATTGAGATCGAGAAAAGCCTCCCATTCCTTAATGATTTCGTTGAACGGGCAATAGAAAAGGGATCTCAACCATACATTCCAGAAAGTGAACGTTCTGGGT TTGCAGGTGTCAGTTACTTAAAGAACCAAGACCTGCAAGAAGTTCCTTCTCATGGTCTTAGGTTTGAGGCCTACGAGCTTCCAAAGCCCACTGTGCCCCT AATAACTCCTCCTGTATCTATTGGATTATCCAATGAACTCATTCCAGTTCCCGAGCCATCATTTAATTTGGTGAATCATACACCTGTGTCTCTGTCATCA TCTGATTCAGGACCCGCAGACGTCAAGTTACGACTAGATGGGGTTCAAAAGAAGTGGGGTAGGTCAACTTATTCATCCTCAGTGTCCACAACAACAAGTG CTGCCCCGCTGGATACTGTCAACGGGGTAACACTGCCAGATGCTGCAGCATCCCCATCTGCTGCTGCTATTCCTAAAGGACGAGAAACAACTTATGAACC AAGGAAGCCCCAAGTAGAAATATCTCCAGAAAAGCAAAAGCTTGCAGCATCACTGTTTGGAGGATCATCAAAGCAGGAAAGGAAGTCATCTCTATCTGGC CCAAAGGCTGTAAAGTCAGGTGGCCATGTACCAAAGGGATCAGATTCGTCGGAGACATCAGCTAAGAAGGCTTCAGTTCAGCCACCACCAGATTTGCTCG ACTTAGGCCAATCAAGTATTGTAAGCACAGCCCCATCAGTTGATCCTTTCAAACAATTGGAGGGGCTACTTGATGTTGTCGAATCGGCAAAACACAGTAA GGTTTGTCATCTGCAACAGCAGGAACTTCTCAAACAGGGATTACGACTTCTCAGGCTGCCCAAATTAGTAAAGGTCCGAACCTAA
AA sequence Show only first row Show all	>Lus10037271 pacid=23152531 polypeptide=Lus10037271 locus=Lus10037271.g ID=Lus10037271.BGIv1.0 annot-version=v1.0 MGSQGGIGQSKEFLDLVKSIGEARSKAEEDRIILREIETLKRRLVEPGIPKRKMKEYIMRLVYVEMLGHDASFGYIHAVKMTHDDHLFLKRTGYLAVTLF LNEDHDLIILIVNTIQKDLKSDNFLIVCAALNAVCKLINEETIPAVLPQVVELLGHQKEAVRKKAIMALHRFYQKSPSSVSHLISNFRKRLCDNDPGVMG ATLCPLFDLISRDASSFKDLVVSFVSILKQVAEHRLPKTYDYHQMSAPFVQIRLLKILSLLGSGDKHASEQMYTVVGDILRKCDSSSNIGNAVLYECVCC VSSMHPSPKLLESAADVIARFLKSDSHNLKYLGIDALCRLIKLSPEIAEKHQLAVIDCLEDPDDTLKRKTFELLLKMTKSSNVEVIIDRMIDYMISINDN HYKTDIVSRCVELAEQFAPSNQWFIQTMNRVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDTADTHLRSSAVESYLRIIGAPKLPSVFLQVICWVLGEFGT ADGKYSASYITGKLCDVAEAYSDDEPVKGYAMTALMKIYAFEMAAGRKVDVLPECETLIEELSASHSSDLQQRAYELQAVLALDAQAIQNIMPSDASCRE IEIEKSLPFLNDFVERAIEKGSQPYIPESERSGFAGVSYLKNQDLQEVPSHGLRFEAYELPKPTVPLITPPVSIGLSNELIPVPEPSFNLVNHTPVSLSS SDSGPADVKLRLDGVQKKWGRSTYSSSVSTTTSAAPLDTVNGVTLPDAAASPSAAAIPKGRETTYEPRKPQVEISPEKQKLAASLFGGSSKQERKSSLSG PKAVKSGGHVPKGSDSSETSAKKASVQPPPDLLDLGQSSIVSTAPSVDPFKQLEGLLDVVESAKHSKVCHLQQQELLKQGLRLLRLPKLVKVRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31730			Adaptin family protein (.1)		Lus10037271 [exp]	0	1
AT1G31730			Adaptin family protein (.1)		Lus10035683 [exp]	1.0	0.9258
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10012303 [exp]	4.2	0.8831
AT1G20760			Calcium-binding EF hand family...		Lus10016028 [exp]	6.5	0.8764
AT1G31730			Adaptin family protein (.1)		Lus10037272 [exp]	8.3	0.9121
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019751 [exp]	8.6	0.9147
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10017160 [exp]	10.7	0.8615
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Lus10025509 [exp]	13.0	0.8461
AT1G31730			Adaptin family protein (.1)		Lus10035684 [exp]	13.4	0.9078
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Lus10032842 [exp]	15.2	0.8534
AT5G53460		GLT1	NADH-dependent glutamate synth...		Lus10019021 [exp]	16.9	0.8310

Compare expression of checked genes

Lus10037271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.