Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31730 1292 / 0 Adaptin family protein (.1) AT1G60070 220 / 9e-60 Adaptor protein complex AP-1, gamma subunit (.1.2) AT1G23900 201 / 3e-53 GAMMA-ADAPTIN 1, GAMMA-AD, GAMMA-ADR, GAMMA-ADAPTIN1 gamma-adaptin 1 (.1.2) AT5G22770 191 / 9e-50 ALPHA-ADR alpha-adaptin (.1.2.3) AT5G22780 191 / 1e-49 Adaptor protein complex AP-2, alpha subunit (.1) AT1G48760 107 / 1e-23 PAT4, DELTA-ADR PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) AT1G23940 61 / 3e-09 ARM repeat superfamily protein (.1) AT4G31490 58 / 4e-08 Coatomer, beta subunit (.1) AT4G31480 57 / 5e-08 Coatomer, beta subunit (.1.2) AT5G11490 44 / 0.0006 adaptin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035684 [exp] 1758 / 0 AT1G31730 1312 / 0.0 Adaptin family protein (.1) Lus10035683 [exp] 1737 / 0 AT1G31730 1343 / 0.0 Adaptin family protein (.1) Lus10037271 [exp] 1586 / 0 AT1G31730 1278 / 0.0 Adaptin family protein (.1) Lus10012988 [exp] 212 / 5e-57 AT1G60070 1397 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10029177 [exp] 208 / 1e-55 AT1G60070 1389 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10020522 [exp] 197 / 2e-51 AT5G22780 1689 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10019520 [exp] 195 / 5e-51 AT5G22780 1672 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10005371 [exp] 194 / 1e-50 AT5G22780 1679 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10043363 [exp] 190 / 3e-49 AT5G22780 1659 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G235200 [exp] 1471 / 0 AT1G31730 1392 / 0.0 Adaptin family protein (.1) Potri.016G104700 [exp] 226 / 1e-61 AT1G60070 1329 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.006G092800 [exp] 223 / 9e-61 AT1G60070 1356 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.004G189700 [exp] 200 / 9e-53 AT5G22770 1659 / 0.0 alpha-adaptin (.1.2.3) Potri.009G150300 [exp] 193 / 2e-50 AT5G22780 1640 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Potri.015G045600 [exp] 107 / 2e-23 AT1G48760 870 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.012G055000 [exp] 106 / 3e-23 AT1G48760 815 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.018G007400 [exp] 62 / 2e-09 AT4G31480 1672 / 0.0 Coatomer, beta subunit (.1.2) Potri.006G273300 [exp] 56 / 2e-07 AT4G31480 1657 / 0.0 Coatomer, beta subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01602 [flax] [poplar] Adaptin_N Adaptin N terminal region
Representative CDS sequence Show only first row Show all	>Lus10037272 pacid=23152275 polypeptide=Lus10037272 locus=Lus10037272.g ID=Lus10037272.BGIv1.0 annot-version=v1.0 ATGGAGCAACTCTTCAAATCCGTTGGGAGGGAGCTCGCCATGGGCTCCCAAGGAGGAATCGGCCAATCGAAGGAGTTCCTTGAGCTGGTCAAGTCAATCG GCGAAGCCCGATCGAAGGCTGAGGAGGACCGTATAATCCTACGCGAAATCGAAATACTAAAGCGACGCCTCGTCGAGCCTGGAATCCCCAAGCGCAAGAT GAAGGAGTACATTATGCGGTTGGTGTACGTGGAGATGCTGGGCCACGATGCTTCATTTGGGTACATTCATGCCGTCAAAATGACACACGACGACCATTTG TTCCTCAAGCGGACGGGTTACTTGGCGGTCACTCTCTTCCTCAATGAAGATCACGATTTGATCATCTTGATTGTCAACACCATTCAGAAGGACTTGAAAT CTGACAACTTTCTGATCGTGTGCGCTGCATTGAATGCGGTCTGTAAATTGATCAACGAGGAGACGATACCTGCTGTTTTGCCTCAAGTAGTGGAATTATT GGGCCATCAGAAGGAAGCTGTTAGAAAGAAGGCTATCATGGCTCTCCATCGCTTCTACCAGAAGTCTCCTTCCTCTGTTTCTCATCTCATTTCCAACTTC CGAAAGAGGCTATGTGATAATGATCCTGGTGTCATGGGTGCAACGCTTTGTCCTCTTTTTGATCTTATCAGTAGAGATGTTAGCTCATTTAAGGATTTGG TGGTCAGCTTTGTAAGCATACTTAAACAAGTAGCTGAGCATAGATTGCCGAAGACTTATGATTACCATCAGATGCCAGCTCCATTTGTACAGATTCGGTT GCTAAAAATTCTATCACTGCTTGGAAGTGGTGATAAACATGCAAGCGAGCAGATGTACACTGTTGTTGGTGACATATTGAGGAAGTGTGATTCATCAAGC AATATAGGAAATGCTGTACTCTATGAATGTGTATGCTGTGTGACATCTATGCATCCTAGTCCTATGTTGTTGGAATCTGCGGCAGATGTAATAGCAAGAT TTTTAAAGAGTGACAGCCATAATCTGAAGTATTTGGGGATAGACGCACTCGGTCGACTGATAAAATTGAGTCCAGAGATAGCAGAACAACACCAGCTGGC TGTGATAGATTGCTTAGAGGACCCAGATGATACCCTAAAGCGAAAAACCTTTGAGCTGCTGCACAAAATGACAAAGTCATCCAATGTGGAAGTGATTGTT AACCGCATGATTGATTACATGATCAGCATAAATGACAATCATTACAAAACCGATATAGTATCTCGTTGTGTTGAACTTGCTGAGCAATTTGCACCAAGCA ACCAATGGTTTATTCAGACCATGAACAGAGTCTTTGAACATGCTGGAGATCTTGTAAACATTAAGGTAGCCCACAACTTGATGCGCTTAATTGCTGAAGG ATTTGGCGAAGATGATGACACTGCAGATACGCACCTTAGATCATCTGCTGTGGAGTCATATTTACGAATTATAGGAGCACCAAAGCTGCCATCCATTTTT CTCCAAGTTATTTGCTGGGTGTTGGGTGAATTCGGGACGGCTGATGGAAAGTATTCTGTATCATATATTACTGGGAAGTTGTGTGATGTAGCTGAGGCAT ACTCTAATGATGAACCTGTCAAGGGTTATACAGTGACAGCACTCATGAAGATATATGCCTTTGAGATGGCTGCTGGTAGAAAAGTGGACGTGCTACCAGA GTGTGAAACCCTGATTGAAGAATTGTCAGCTTCCCACTCAAGTGACTTGCAGCAGCGTGCATATGAACTCCAAGCAGTCGTTGCCCTAGATGCCCATGCT ATTGAAAACATCATGCCATCAGACGCAAGCTGCAGAGAGATTGAGATTGATAAAAGCCTCCCTTTCCTTGATGATTTCGTTGAGCGGGCAATAGAAAAGG GATCTCAACCATACATTCCAGAAAGTGAACGTTCTGGGTTTGCAGGTGTCAGTTACTTAAAGAACCAAGACCTACAAGAAGTTCCTTCTCATGGTCTTAG GTTTGAGGCCTATGAGCTTCCAAAGCCCTCTGTGCCCCTTACAAGTCCTCCTGTATCTATTGGAACATCCAACGAACTCATTCCAGTTTCCGAGCCATCA TTTAACTTGGTGAATCAGACAACTGTGTCTCTGTCGTCATCTGATGCAGGACCTGCAGGCATCAAGTTACAGCTTGATGGGGTTCAAAAGAAGTGGGGTA GGCCAACTTATTCATCTTCAGTGTCCACAACAACAAGTGCTGCCCCGCAGGATACCGTCAATGGGGTAACACTGCCAGATGCTGCAGCAGCCGCGTCTGC TGCTGCTATTCCTAAACGACAAGAAATAACTTATGAACTGAGGAAGCCCCAAGTAGAAATTTCCTCAGAAAAGCAAAAGCTTGCAGCATCGCTGTTTGGA GGATCATCAAAACAGGAAAGAAAGTCATCTCTATCTGGCCAAAAGACTGTAAAGTCAAGTGGCCATGCAGCAAAGGGATCAGATTTGTCGGAGACTTCAG CTAAGAAGAAGGCTCCTGTTCAGCCACCGCCAGATTTGCTCGACTTAGGCCAAACAAGTAATGTAATCACAGCCCCATCAGTTGACCCTTTCAAACAATT GGAGGGGCTACTTGATGTTGTCGAATCGGCAAATCACAGTAATGTCAGTGGCACAAAAACACCAGATTTTATGGGCTTATATGGAGACTCTGATACTACT GGTCCGGATGGTGGCCACCATTTCTCAAGTATCAATGATGTGGATAATCTTATGTCTGGTTTGTCATCTGCAACTTCTCAGACTGCCCAAATTAGTAAAG GTCCGAGCATAAAAGATGCCTTACAGAAGGATGCATTGGTAAGGCAGATGGGTGTGACCCCGTCGAGCCAAAATCCCAACTTATTTAAAGATCTGTTAGG CTGA
AA sequence Show only first row Show all	>Lus10037272 pacid=23152275 polypeptide=Lus10037272 locus=Lus10037272.g ID=Lus10037272.BGIv1.0 annot-version=v1.0 MEQLFKSVGRELAMGSQGGIGQSKEFLELVKSIGEARSKAEEDRIILREIEILKRRLVEPGIPKRKMKEYIMRLVYVEMLGHDASFGYIHAVKMTHDDHL FLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNFLIVCAALNAVCKLINEETIPAVLPQVVELLGHQKEAVRKKAIMALHRFYQKSPSSVSHLISNF RKRLCDNDPGVMGATLCPLFDLISRDVSSFKDLVVSFVSILKQVAEHRLPKTYDYHQMPAPFVQIRLLKILSLLGSGDKHASEQMYTVVGDILRKCDSSS NIGNAVLYECVCCVTSMHPSPMLLESAADVIARFLKSDSHNLKYLGIDALGRLIKLSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLHKMTKSSNVEVIV NRMIDYMISINDNHYKTDIVSRCVELAEQFAPSNQWFIQTMNRVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDTADTHLRSSAVESYLRIIGAPKLPSIF LQVICWVLGEFGTADGKYSVSYITGKLCDVAEAYSNDEPVKGYTVTALMKIYAFEMAAGRKVDVLPECETLIEELSASHSSDLQQRAYELQAVVALDAHA IENIMPSDASCREIEIDKSLPFLDDFVERAIEKGSQPYIPESERSGFAGVSYLKNQDLQEVPSHGLRFEAYELPKPSVPLTSPPVSIGTSNELIPVSEPS FNLVNQTTVSLSSSDAGPAGIKLQLDGVQKKWGRPTYSSSVSTTTSAAPQDTVNGVTLPDAAAAASAAAIPKRQEITYELRKPQVEISSEKQKLAASLFG GSSKQERKSSLSGQKTVKSSGHAAKGSDLSETSAKKKAPVQPPPDLLDLGQTSNVITAPSVDPFKQLEGLLDVVESANHSNVSGTKTPDFMGLYGDSDTT GPDGGHHFSSINDVDNLMSGLSSATSQTAQISKGPSIKDALQKDALVRQMGVTPSSQNPNLFKDLLG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31730			Adaptin family protein (.1)		Lus10037272 [exp]	0	1
AT1G31730			Adaptin family protein (.1)		Lus10035684 [exp]	2.0	0.9606
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10028796 [exp]	5.0	0.9094
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10027159 [exp]	5.3	0.9393
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10038084 [exp]	6.9	0.9409
AT5G24710			Transducin/WD40 repeat-like su...		Lus10040563 [exp]	7.7	0.9393
AT1G31730			Adaptin family protein (.1)		Lus10037271 [exp]	8.3	0.9121
AT1G35220			unknown protein		Lus10010355 [exp]	8.4	0.9390
AT1G35220			unknown protein		Lus10036487 [exp]	10.6	0.9382
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10023393 [exp]	11.5	0.9383
AT5G16300			Vps51/Vps67 family (components...		Lus10041337 [exp]	11.8	0.9163

Compare expression of checked genes

Lus10037272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.