Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19230 461 / 1e-161 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT5G45340 457 / 4e-160 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT2G29090 360 / 7e-122 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT3G19270 350 / 3e-118 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT1G19630 162 / 2e-45 CYP722A1 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) AT2G42850 160 / 1e-44 CYP718 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) AT1G05160 157 / 2e-43 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) AT5G05690 150 / 8e-41 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT2G32440 150 / 9e-41 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) AT5G36110 134 / 4e-35 CYP716A1 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035685 [exp] 564 / 0 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10034768 [exp] 490 / 9e-173 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10033308 [exp] 489 / 2e-172 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10016515 [exp] 348 / 1e-116 AT2G29090 554 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Lus10021725 [exp] 333 / 2e-111 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10042652 [exp] 334 / 3e-111 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10019858 [exp] 324 / 2e-107 AT3G19270 643 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10012675 [exp] 301 / 9e-99 AT3G19270 586 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10040785 [exp] 258 / 3e-77 AT1G07510 1078 / 0.0 FTSH protease 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G235400 [exp] 473 / 4e-166 AT4G19230 778 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Potri.001G242600 [exp] 362 / 3e-122 AT2G29090 652 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.009G033900 [exp] 358 / 7e-121 AT2G29090 677 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.004G140900 [exp] 357 / 1e-120 AT3G19270 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.014G029100 [exp] 351 / 2e-118 AT3G19270 665 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.002G126100 [exp] 348 / 3e-117 AT3G19270 666 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.009G101700 [exp] 343 / 5e-115 AT3G19270 711 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.012G071300 [exp] 166 / 6e-47 AT1G05160 285 / 9e-91 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.002G069600 [exp] 165 / 2e-46 AT5G45340 296 / 1e-95 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Potri.002G060700 [exp] 163 / 8e-46 AT2G42850 582 / 0.0 "cytochrome P450, family 718", cytochrome P450, family 718 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10037273 pacid=23152510 polypeptide=Lus10037273 locus=Lus10037273.g ID=Lus10037273.BGIv1.0 annot-version=v1.0 ATGATCTCCAGCCCCGAGGCTGCGAAATTCGTTCTGGTAACAAAATCCCACCTCTTCAAGCCCACATTCCCTGCCAGTAAAGAGCGGATGCTCGGACGGC AGGCCATCTTCTTCCACCAAGGAGATTACCACGCCAAGCTTCGAAAGCTCGTCCTTCGCGCTTTCCTCCCTCGATCACTCCAGCACATCGTCCCTCGCGT CGAATCGCTCGCTCTCCGCTCCATCCGCTCCTGGGAAGCCGCCGAAGAAATCAACACTTACCTCGAAATGAAAACAGTGAGTGACGCAGATCACTTACAC GTTCAATGTGGCGCTTCTGTCGATATTCGGAAAGGACGGAATGCTGTACGGAGAGGAGCTGAAGAGATGTTACTACGTTCTGGAAAAGGGGTACAATTCG ATGCCGGTGAACTTACCGGGGACGCTCTTCCACAAGGCGATGAAGGCGAGGAAGGAGATTGCGACGATTGTAGCGAGAATCATGGCTACAAGGCGGGAAA CGAAGACAGGAGAGAAACTAAGATGGAGTACAATGACCTGTTGGGTTCTTTCATGGAGGATAAAGAAGGGCTCACCGACGAGCAAATCGCTGATAACGTC ATCGGAGTCATCTTCGCAGCTAGGGACACAACCGCCAGTGCTCTCACCTGGGTCCTCAAGTACCTCGGACAGAACCCTTCAGTTCTCCAGGCCGTCACTG AAGAGCAAGATGAAATTGCGAAGGAGATGGATGGAGTTTTGAGTTGGGAAGATATGAAAAAGATGCCGATTACATCAAGGGTGATCCAGGAGACGCTCAG GGTTGCTTCGATTCTTTCTTTCACTTTCAGGGAAGCTGTTGAAGATGTTGAGTATGAAGGGTATCTGATCCCAAAAGGATGGAAAGTGTTACCCTTGTTC AGGAACATTCACCACAGCCCTGAAATCTTCCCTGACCCTGAGAAATTCGACCCTTCCAGATTCCAGGTGGCGCCAAAGCCCAATACCTTTATGCCATTTG GAAGTGGGACCCACTCATGCCCTGGAAATGAGTGGACTATTGTTGGTGAGAATGATGGGATTCAATATGGTCCGTTTGCACTTCCCCAGAATGGTCTGCC CATCAAGCTATCCCTCAGAAAATAA
AA sequence Show only first row Show all	>Lus10037273 pacid=23152510 polypeptide=Lus10037273 locus=Lus10037273.g ID=Lus10037273.BGIv1.0 annot-version=v1.0 MISSPEAAKFVLVTKSHLFKPTFPASKERMLGRQAIFFHQGDYHAKLRKLVLRAFLPRSLQHIVPRVESLALRSIRSWEAAEEINTYLEMKTVSDADHLH VQCGASVDIRKGRNAVRRGAEEMLLRSGKGVQFDAGELTGDALPQGDEGEEGDCDDCSENHGYKAGNEDRRETKMEYNDLLGSFMEDKEGLTDEQIADNV IGVIFAARDTTASALTWVLKYLGQNPSVLQAVTEEQDEIAKEMDGVLSWEDMKKMPITSRVIQETLRVASILSFTFREAVEDVEYEGYLIPKGWKVLPLF RNIHHSPEIFPDPEKFDPSRFQVAPKPNTFMPFGSGTHSCPGNEWTIVGENDGIQYGPFALPQNGLPIKLSLRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19230		CYP707A1	"cytochrome P450, family 707, ...		Lus10037273 [exp]	0	1
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Lus10003466 [exp]	2.8	0.9104
AT4G19230		CYP707A1	"cytochrome P450, family 707, ...		Lus10035685 [exp]	3.3	0.8707
AT4G33780			unknown protein		Lus10035665 [exp]	3.5	0.8854
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Lus10032919 [exp]	7.5	0.9020
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Lus10036136 [exp]	8.4	0.8725
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Lus10005424 [exp]	10.5	0.8237
AT1G18210			Calcium-binding EF-hand family...		Lus10031345 [exp]	10.7	0.8819
AT4G34150			Calcium-dependent lipid-bindin...		Lus10027875 [exp]	11.2	0.8909
AT3G20600		NDR1	non race-specific disease resi...		Lus10011162 [exp]	15.0	0.8822
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10020772 [exp]	15.9	0.8619

Compare expression of checked genes

Lus10037273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.