Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037274 pacid=23152586 polypeptide=Lus10037274 locus=Lus10037274.g ID=Lus10037274.BGIv1.0 annot-version=v1.0 ATGCATTTTGGCTGGCCTTCAAGGATTGACAGGGTCAAGGAAGCTCTAGATGTTAGGGCAGAAATTTCCATGGAGGTCTGTGAAGTCACAGTCCAGACTG TGGTGTTCTATATCAGGAGTGTGTTTTCATTCTTTTCAGGAATCAGGATCAGTATGGACGTCGCTGCTGTTCTCAACGACAAAAGAAGAGGGAATCTCGA AGTACTTGACGGGCATTCTCAATGCAATCAGAAAATCACTTTCATGCAAAAAGAGAAAAGGGACGCAGCCATCACATGCTTCAACTTCCAGGTTTGCAGT TTTAGTTCTGTGGTTGAAATGGTGTTAACATTTTCTATCATGGCTTGGCACACGTTTAGCAAATTGTCCAGAATGGAGGAAGTTTATGACAGCAGGCGAG ATTGCTATGTGAAAGTAAAGGATACAGCTTGA
AA sequence Show only first row Show all	>Lus10037274 pacid=23152586 polypeptide=Lus10037274 locus=Lus10037274.g ID=Lus10037274.BGIv1.0 annot-version=v1.0 MHFGWPSRIDRVKEALDVRAEISMEVCEVTVQTVVFYIRSVFSFFSGIRISMDVAAVLNDKRRGNLEVLDGHSQCNQKITFMQKEKRDAAITCFNFQVCS FSSVVEMVLTFSIMAWHTFSKLSRMEEVYDSRRDCYVKVKDTA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10037274 [exp]	0	1
AT2G17787			unknown protein		Lus10013567 [exp]	6.0	0.8728
AT1G11330			S-locus lectin protein kinase ...		Lus10015422 [exp]	11.7	0.8680
AT1G78070			Transducin/WD40 repeat-like su...		Lus10036428 [exp]	13.2	0.8659
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10031489 [exp]	14.1	0.8680
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Lus10041854 [exp]	15.5	0.8590
AT2G17787			unknown protein		Lus10017274 [exp]	16.1	0.8667
AT1G15200			protein-protein interaction re...		Lus10023800 [exp]	18.2	0.8685
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10005091 [exp]	29.4	0.8597
AT3G52230			unknown protein		Lus10038643 [exp]	33.4	0.8260
					Lus10042562 [exp]	36.1	0.8316

Compare expression of checked genes

Lus10037274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.