Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17616 541 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G03100 233 / 2e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G69290 119 / 1e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G68980 98 / 5e-21 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09650 89 / 4e-18 CRM3, HCF152 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G11690 76 / 4e-14 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G49730 62 / 6e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G38730 61 / 2e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G64583 60 / 4e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65560 60 / 5e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035686 [exp] 341 / 1e-112 AT4G17616 176 / 2e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007353 [exp] 257 / 1e-75 AT1G03100 1003 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020775 [exp] 239 / 2e-69 AT1G03100 961 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037077 [exp] 129 / 8e-31 AT1G69290 827 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015059 [exp] 91 / 2e-18 AT3G09650 969 / 0.0 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10037319 [exp] 72 / 8e-13 AT4G11690 534 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10023168 [exp] 66 / 7e-12 AT3G09650 314 / 1e-102 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038804 [exp] 59 / 8e-09 AT5G64320 367 / 3e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034419 [exp] 59 / 9e-09 AT1G73400 684 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G084400 [exp] 678 / 0 AT4G17616 676 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G212400 [exp] 274 / 2e-81 AT1G03100 1044 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G095800 [exp] 135 / 6e-33 AT1G69290 860 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G085300 [exp] 77 / 2e-14 AT3G09650 961 / 0.0 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271200 [exp] 62 / 6e-10 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G015900 [exp] 62 / 1e-09 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 61 / 2e-09 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271400 [exp] 60 / 4e-09 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.017G131600 [exp] 60 / 4e-09 AT4G11690 632 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G034200 [exp] 60 / 5e-09 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10037275 pacid=23152321 polypeptide=Lus10037275 locus=Lus10037275.g ID=Lus10037275.BGIv1.0 annot-version=v1.0 ATGGCATTCATTATGGGAAGAGAAAGGAAACTGTTACATTTTCGTGCGATCAAAAGCTGTACCCTTCTCTGCGATGTGGTTTCCGATGTTCGCAAGGTCC GTTCAGTTTCATTTCACAATCGATATATTGCCACTGAGAAAACTATTGGCAAGTTTCATATGATAAACACATGTGTTCAGCAATTTCGGCTTTTGGCGTA CCAATCTTATTCTAGTACTACTCAACATGCAAAGTTACCTTGGGAGGCTTCCTCCCGTACTGTTCTCCTCAGAAAGCTTGAGAGTGCTCTAAACAACCAT GAAATTGCTGAGGCATGGTTGAATTTCAATAGCTTTAAAGGCTTATATGGATTTCCTCCACATGAACTATTGAACAGGTTGGTCATGGAATTATCATACT CTGCCGACTCTCGGTGGCTACAAATAGCATACAAGTTAGTGATCCTCATTCGGGAAATGCTGGAAAAAAGGATTATGCCTCCAGTGGATGTGTTGCAGTT GGTTTTTCTCCACATGGTAAAAACAGACATAGGGGCTAACCTTGCTTCGAATTTCTTGATTCAAATATGCGAGTGTTTCCTTGATCCAACTGCAAAGAAG GGTCCAACGAAACTGCTGCAACCAGATACCATGACTTTCAATATTATTCTTGATGGATGTGTAAGATTTAAGTCGTCTCTGAAAGGTCAAGAGCTTCTAG AGCTGATGTCTCAAGTAGGTGTTATTGCTGATGCTCAATCGATAACTCTTATCGCCCAGATCCACGAAATGAATGGCCTCAGGGACGAGATTAAGAAACT TAAATATCATATTGATGGCGTACCTGCTTGTTTTCTTCGTCACTACCAGCAGTTATACAATAGTTTGTTGAACATGCACTTCAAGTTTGATGACATTGAT GCTGCTATTAAGCTCATCTTGGATCTGCATACCCCTCGGGGTTTGACTCCTCACGAGAAATGTAGAAGGGAATTAGAAAAGCCCCATCTTGTTTCCATTG GATCCGGCAACATTAGGTCTGGCCTGAAGATTCAGATTATGCCAGAAATATTGTTGAAGGATTCGGTTTTACAATCACAACCTGAACAAGAGCTTGTTAA TGTCAGGAATGGGAGAATTATCCTTAGGACCAAAGCGTTGGCAAAGCTAATTGATGGTTGCAAGAGGCATGGGAGGATCAGTGAGCTGTCAGAGCTTTTA TTTAGCATTGAGAAAGAGTACCATATACTGGGAGTCCCCAGCTTATGTTCTGATGTCACTGAAGCTTGTGTTCATGTAGGTTGGCTAGAAACTGCTCATG ACATCTTGGACGACATGGAGAAACTTGGTGCTACAATGAGCTTGACTACATATATGACACTCTTAGCAGCATACTATAAGAAACAGATGTCGAAACAAGG AATGGCATTGCTACGGAAAATGAGGAGCAGTGGTTGGCTCGTCGATGTGCCTAATGAGGCAGTAGCATCCTCTTGTATATCCGAACCGTCAAAAAGTGCA TCAGATCTGGCTGAGCTTTTGTTTCAAGAAGCAGGGGAAGAAAAGGGTATGTCTTTTGCTGTGTTACACGAGCTAAACTCTACTATTTACTTCTTTTGCA AAGCGAAAATGATTGAAGATGCTCTAAAGACGTACCGGAAAATGGAACATAATGGAATCCAACCCACGGTTCACACCTTTGCTCATCTTGTACATGGGTA TTCTTCCTTAGGAATGTACAGGGACATTACGATTCTATGGGGAGACATAAAACGTAGCGTGGAAAGGGGGAACTTAACATTGTGTAGGGACCTGTACGAA TGCTTGCTTCTGAACTTTCTTCGAGGTGGTTATTTCGAGAGAGTGATGGAGATTGTCCATTGTATGAGAAATCAGAGCATGTATGCTGACAAATGGATGT ACAGATGTGAGTTCTTGAAGTTGCATAAGAATCTGTACAGGAGTTTGAAAGCTTCGAAGATGACAAATGATGTAAAAAAGAAGAGGATTGAGCAGGTCTC TGCATTCAGAAGATGGGCAGGACTGTTGTGA
AA sequence Show only first row Show all	>Lus10037275 pacid=23152321 polypeptide=Lus10037275 locus=Lus10037275.g ID=Lus10037275.BGIv1.0 annot-version=v1.0 MAFIMGRERKLLHFRAIKSCTLLCDVVSDVRKVRSVSFHNRYIATEKTIGKFHMINTCVQQFRLLAYQSYSSTTQHAKLPWEASSRTVLLRKLESALNNH EIAEAWLNFNSFKGLYGFPPHELLNRLVMELSYSADSRWLQIAYKLVILIREMLEKRIMPPVDVLQLVFLHMVKTDIGANLASNFLIQICECFLDPTAKK GPTKLLQPDTMTFNIILDGCVRFKSSLKGQELLELMSQVGVIADAQSITLIAQIHEMNGLRDEIKKLKYHIDGVPACFLRHYQQLYNSLLNMHFKFDDID AAIKLILDLHTPRGLTPHEKCRRELEKPHLVSIGSGNIRSGLKIQIMPEILLKDSVLQSQPEQELVNVRNGRIILRTKALAKLIDGCKRHGRISELSELL FSIEKEYHILGVPSLCSDVTEACVHVGWLETAHDILDDMEKLGATMSLTTYMTLLAAYYKKQMSKQGMALLRKMRSSGWLVDVPNEAVASSCISEPSKSA SDLAELLFQEAGEEKGMSFAVLHELNSTIYFFCKAKMIEDALKTYRKMEHNGIQPTVHTFAHLVHGYSSLGMYRDITILWGDIKRSVERGNLTLCRDLYE CLLLNFLRGGYFERVMEIVHCMRNQSMYADKWMYRCEFLKLHKNLYRSLKASKMTNDVKKKRIEQVSAFRRWAGLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17616			Pentatricopeptide repeat (PPR)...		Lus10037275 [exp]	0	1
AT3G21480			BRCT domain-containing DNA rep...		Lus10038633 [exp]	2.4	0.8989
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10038081 [exp]	3.5	0.8890
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10037903 [exp]	6.9	0.8741
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10037517 [exp]	7.7	0.8728
AT3G54980			Pentatricopeptide repeat (PPR)...		Lus10019524 [exp]	9.3	0.8758
AT2G20790			clathrin adaptor complexes med...		Lus10034013 [exp]	9.5	0.8708
AT4G16580			Protein phosphatase 2C family ...		Lus10016309 [exp]	9.5	0.8621
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10037515 [exp]	12.0	0.8695
AT2G24640		UBP19	ubiquitin-specific protease 19...		Lus10026918 [exp]	13.0	0.8704
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10016881 [exp]	13.0	0.8675

Compare expression of checked genes

Lus10037275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.