Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28040 847 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT3G56370 533 / 5e-174 Leucine-rich repeat protein kinase family protein (.1) AT5G01890 520 / 6e-169 Leucine-rich receptor-like protein kinase family protein (.1) AT1G75640 254 / 6e-70 Leucine-rich receptor-like protein kinase family protein (.1) AT1G12460 234 / 4e-64 Leucine-rich repeat protein kinase family protein (.1) AT1G62950 226 / 1e-61 leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G78530 178 / 4e-49 Protein kinase superfamily protein (.1) AT5G49660 188 / 1e-48 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G28650 186 / 4e-48 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G20140 185 / 1e-47 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035687 [exp] 1478 / 0 AT3G28040 1021 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10030526 [exp] 570 / 0 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012877 [exp] 565 / 0 AT3G56370 1162 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014174 [exp] 529 / 1e-172 AT5G01890 1032 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10022738 [exp] 527 / 1e-171 AT5G01890 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10025223 [exp] 526 / 1e-171 AT3G56370 1026 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025139 [exp] 525 / 4e-171 AT3G56370 1021 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10006675 [exp] 356 / 6e-108 AT1G12460 984 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007020 [exp] 220 / 8e-64 AT1G12460 435 / 2e-146 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G147300 [exp] 963 / 0 AT3G28040 1156 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G233600 [exp] 935 / 0 AT3G28040 1116 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.016G137000 [exp] 562 / 0 AT3G56370 1116 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G091000 [exp] 557 / 0 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G058600 [exp] 552 / 0 AT3G56370 1174 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G108600 [exp] 548 / 1e-179 AT5G01890 1115 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G117500 [exp] 241 / 1e-66 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G114500 [exp] 236 / 7e-65 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G111700 [exp] 187 / 2e-48 AT5G49660 1229 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.001G380800 [exp] 177 / 2e-48 AT1G78530 535 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10037276 pacid=23152368 polypeptide=Lus10037276 locus=Lus10037276.g ID=Lus10037276.BGIv1.0 annot-version=v1.0 ATGGCTCCTCCAAACAATCCACTGCTCATCATCTCAGTTTCAACCTTTCTCATCATTCTGTTCAACCCCATCCCCACCATAGCCGTTGCTGTCAGCGATG ATGCTATCCCCTTCCTAGACGAAGTATTCGGGCTCATTGCATTCAAGTCCGACCTCAACGACCCTTACTCCCACCTCTCCACCTGGAACCAAGACGACGA CTCTCCTTGCTCCTGGCGATTCGTCACTTGCAACCCTTCCACCCGCAGGGTCACCTCCCTCTCCCTCGACAACTTATCCTTGTCCGGAAAGCTTGGTCGC GGCCTCCACAAATTGAATCACTTGAACTCACTCTCCCTCTCCCACAACAACATTTCAGGTTCCATCCCTTCTTCCCTTGTTGACACCCCTTCTCTTCAAC ATCTTAACCTCAGCCACAACTCTCTTTCCGGCCCCATTCCTTCTTCTTTTGTAAACACCAATTCACTCAAATTCATGGACCTCTCCCACAATTCCTTATC CGGCTCTCTCACTGACGAACTTTTCATCAACTCTTCTTCGCTCCGCGTGCTGTCTTTGTCTGGCAATTCGCTTCACGGTCCTATTCCGGCTTCTCTGTAC CGATGCTCTCTTCTAAATACCTTGATTCTCTCTGGCAACCTATTGTCCGGCGTCCCGGATTTCTATTCCGGTATTTGGTCGCTGTCTCGGCTTCGAAATC TCGACCTTTCGCACAATTCGTTCACTGGGTCAGTGTCAAAAGGAGCGTTCAGGCTACCTTACTTGAAAGAGCTAAGATTACATGGCAACGGTTTCGCAGG GGAAATACCTTGGGATATTGGCCTCTGCTCTCACCTGAATTTGTTGGATTTGAGCCACAATGGTTTCACCGGTCCCATTCCTCCTTATCTCCAGAGGCTC ACTTCTCTTTCCCACCTCAGCTTGTCCAACAACCAGCTAATTGGGGATCTACCTCCCTGGTTTAGCAAGCTCAGCAATTTGAAATTCCTCGACTTGGGCA ACAATGATTTAACAGGCGGCATTCCCAAATCAATCGTGTTCTGCACTGGGCTAACCGTGATTCGGCTACGAAGGAACAACTTTAACGGCACCATCCCAGA CTATATGTTCATTGCTCTTGGCAGCCTTGAGGAAGTGGATTTGTCCCACAATCAACTAGTTGGAACAGTGCCGCCATTTTCCCCTGCATTCTTCAAGTCC ATTCACACTATGGATCTTTCCAGTAATCGTCTCACTGGCAACATTCCTTCCGGAACCGGACTAAGCTCCTCCAGCTTGAGGGAGTTGAACTTGTCCATGA ACAACCTGCAAACAAGGCTACCTCCTGAACTTGGTTATGTACAAAACCTAACAGTTCTCGACTTAAGATATAGTTCTGTTCATGGCTCCATCCCTTCTGA TTTATGCGAATCAGGAAGGCTAACTATTCTGCAATTAGATGGGAATTCTCTAACCGGTCCTATCCCTGAAGAAATCGGCAATTGTTCATCTCTCTACTTG CTGAGCCTATCCCGCAACAATTTGAGCGGCTCAATCCCAGAGTCCATCTCCAAGCTAAGCAAGCTCAAATTCTTGCGGTTGGAATTCAATTCGCTGAGTG GAGGCTTGCCAAACAAGTTAGGAGCACTGAACAATCTTCTTGCAGTGAACATTTCTCACAACAAGCTCATCGGCAGGCTCCCAGAAGGCGGAATTTTCCC CAACTTAGACGCGAGCGCACTGCAAGACAACTTAGGGATTTGTTCCCCGCTACTGAAAGGACCTTGCAAGATGGATGCGGCTAAGCCGCTAGTCATTGAT CCCTTCGGCTATCTACCCATCGGGATTAACCCGCCAAACAACTCAAACTCACCAGCCTCACACGCTCACCGCACGTTCCTCACTGTGTCCGCCATCGTAG CAATCGGCGCAGCCGTTTTCATCATCATCGGAGTAGTCATCATCACCTTGCTCAACGTATCCACCAGGAAGAGGCTCGCGTTTGTTGAGCACGCGCTTGA GAGCATGTGCTCCAGCTCTGTTTCCAGATCGTCAGGCAACCTTTCGGCCAGCAACACAGGCAGGCTTGTTCTGTTCGATTCTAAGTCATCGTCGTCGTTA AAGAAATCTCTCCGTCAACATTTGACCCGCGACAACGTCAATCCGGAATCGCTACTGAGCAAAGGGGTAGAGGAGATTGGAGAAGGCGATTTAGGAACGG TTTACAAAATCGTGATCGGCTCGGAAGGAAGAGCAGTAGTCGCCGTTAAGAAGCTAGACGCATCAAAGATCATTCAACACGTTGATGATTTCGACAGAGA AGTGAGATTCCTGGGGAAGGTAAAGCACCACAATCTCTTGTCCCTGCAAGGATATTACTGGACGCCGCAACTGCAACTTCTGGTGACGGAGTACGCTCCC AACGGAAGCTTGCAGGCTAAGCTCCAACGCGGGCCGGCGCTGACATGGGCTGAGAGGTTCAAGATCCTGATGGGGATGGCCCATGGACTGGCCCATCTAT ATCACACGTTCCGCCCCGCGATAATCCACTACAACGTCAGGCCCAGCAACGTGCTGCTGGATGCGGATCTGAACCCGAAATTGTCAGACTTTGGGCTGAC TAGGCTGCTGACGAAGCAGGAGAGGCACGTGGCCGGAGAAGGAGGAAGGTTTGGAAGGTCGTTTGGGTACGTGGCGCCGGAGGTGGCTTGTAAGAGCCTG AGGGTGAACGAGAAGTGTGACGTGTACGGGTTTGGGGTGGTGGCCCTAGAAGTGGTGACGGGGCGGCGGCCGGTGGAGTACGGAGATGAGAGCGTGGTGA TATTGAGCGATCATGTGAAGGCGATGTTGGAGGAAGGGAATGTGTTGGAGTGCGTGGATTCAAGGATGGAGATGGGTAGTTGGCCGGAGGAAGAAGTGAT GCCGGTGTTGAAGCTTGCTCTGGTTTGTACGTCTCAGGTTCCTTCCACCCGTCCTTCCATGGCGGAAGTTGTGCAGATCTTACAAGTCATTAAAACTCCT GTTCCAAGCTAG
AA sequence Show only first row Show all	>Lus10037276 pacid=23152368 polypeptide=Lus10037276 locus=Lus10037276.g ID=Lus10037276.BGIv1.0 annot-version=v1.0 MAPPNNPLLIISVSTFLIILFNPIPTIAVAVSDDAIPFLDEVFGLIAFKSDLNDPYSHLSTWNQDDDSPCSWRFVTCNPSTRRVTSLSLDNLSLSGKLGR GLHKLNHLNSLSLSHNNISGSIPSSLVDTPSLQHLNLSHNSLSGPIPSSFVNTNSLKFMDLSHNSLSGSLTDELFINSSSLRVLSLSGNSLHGPIPASLY RCSLLNTLILSGNLLSGVPDFYSGIWSLSRLRNLDLSHNSFTGSVSKGAFRLPYLKELRLHGNGFAGEIPWDIGLCSHLNLLDLSHNGFTGPIPPYLQRL TSLSHLSLSNNQLIGDLPPWFSKLSNLKFLDLGNNDLTGGIPKSIVFCTGLTVIRLRRNNFNGTIPDYMFIALGSLEEVDLSHNQLVGTVPPFSPAFFKS IHTMDLSSNRLTGNIPSGTGLSSSSLRELNLSMNNLQTRLPPELGYVQNLTVLDLRYSSVHGSIPSDLCESGRLTILQLDGNSLTGPIPEEIGNCSSLYL LSLSRNNLSGSIPESISKLSKLKFLRLEFNSLSGGLPNKLGALNNLLAVNISHNKLIGRLPEGGIFPNLDASALQDNLGICSPLLKGPCKMDAAKPLVID PFGYLPIGINPPNNSNSPASHAHRTFLTVSAIVAIGAAVFIIIGVVIITLLNVSTRKRLAFVEHALESMCSSSVSRSSGNLSASNTGRLVLFDSKSSSSL KKSLRQHLTRDNVNPESLLSKGVEEIGEGDLGTVYKIVIGSEGRAVVAVKKLDASKIIQHVDDFDREVRFLGKVKHHNLLSLQGYYWTPQLQLLVTEYAP NGSLQAKLQRGPALTWAERFKILMGMAHGLAHLYHTFRPAIIHYNVRPSNVLLDADLNPKLSDFGLTRLLTKQERHVAGEGGRFGRSFGYVAPEVACKSL RVNEKCDVYGFGVVALEVVTGRRPVEYGDESVVILSDHVKAMLEEGNVLECVDSRMEMGSWPEEEVMPVLKLALVCTSQVPSTRPSMAEVVQILQVIKTP VPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28040			Leucine-rich receptor-like pro...		Lus10037276 [exp]	0	1
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028223 [exp]	1.7	0.9193
AT3G03770			Leucine-rich repeat protein ki...		Lus10034873 [exp]	2.0	0.9113
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10042930 [exp]	2.4	0.9133
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10003021 [exp]	2.6	0.8952
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Lus10042325 [exp]	3.2	0.9076
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10028926 [exp]	3.9	0.8814
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028224 [exp]	4.0	0.9134
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10001833 [exp]	4.9	0.8936
AT1G10850			Leucine-rich repeat protein ki...		Lus10029075 [exp]	9.5	0.8913
AT1G67590			Remorin family protein (.1.2)		Lus10036997 [exp]	15.2	0.8695

Compare expression of checked genes

Lus10037276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.