Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19190 421 / 5e-142 zinc knuckle (CCHC-type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035690 [exp] 561 / 0 AT4G19190 461 / 6e-158 zinc knuckle (CCHC-type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G236300 [exp] 432 / 3e-148 AT4G19190 401 / 7e-135 zinc knuckle (CCHC-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10197 [flax] [poplar] Cir_N N-terminal domain of CBF1 interacting co-repressor CIR
Representative CDS sequence Show only first row Show all	>Lus10037279 pacid=23152460 polypeptide=Lus10037279 locus=Lus10037279.g ID=Lus10037279.BGIv1.0 annot-version=v1.0 ATGGAGGGAGAAGAAGGAGGAGGGATGCGGCTGAGCAAGCGAATCAACAATGGAGAAGTCGATTACAAGACCAAATCCGGCACAGCTTGGAGCCATAACT TCCTCAACCAGAAGCCTTGGCATCCTCTCTCCTACCCTAACCAGCGCCGCAAGTGGATCGCTGAACAGACCCACGCTCAGCATAGCCGCCGCTCCGAGGA AGTTGCTCGCGAGTATGCTCAAGAGCAGGAATTCTTCCGTCAGACAGCTCTCATCTCCCAGAAAGAGAAGGAAAAGATGGAGATAATGCAAGCTGTTAGC TTCATGTACGTTCGCCCACCTGGCTATAATCCTGAAAGTGCCAAGGCAGCCGAGATTGCCGAGGAAGACAAGAAGAAGCAACAAGATACCGCCCTTACGG ACCCAACTGATGGGCAATCAGAACCACTGCCCAATAAAGATCCCCCAGTTGAAGAAAAGAAGAAGCGAAGGCCTAAAGATGCCTTTGGCCGCCCTTTGCC AACTGAAGAACAATTTGAAGTCCTGAAAAATGCTCCAAGGCATGATACAGGTGTTGCAACAAGGTCAAAACCTTTTGGAATTGAGGTGCGGAATGTGAAG TGTGTAAGATGTGGAAATTTTGGTCACCAAAGTGGCGATCGTGAATGTCCCCTCAAAGATGCTATAATGCCAAGTGAGGAAAGCCGACTGAAACGAGATG ATCCGTTGACTGCCATCATGGCTCAGATGGAGCCAGCAGAGCCGCTTAAGTGGGAGCTAAAGCAACAACCAGGGATGAGCCCTCCTCGGGGAGGTTTCGA TGCAGACGACCCGAATCAGCAGATTGTTGCAGAAGACATATTCGATGAATATGGAGGCTTTCTCAGCGGCGGAGGTATCCCGGAGTTGCTGTCCAACTTT AGCCCCGGCGAGCTTAAAAAGAAGAAGTCCAGAAGTCATAAACGAAAGAGCAAGTCATCGAATAAGGAGAGGAGGGTGGATGAAGAAAATGATTTATCTT CTTCCTCGGACAGCGGGGAATGGAGATCAAAGAAAGAAAGTAGGAAGAAGAAGAAGAATAAGGATTCGGATTCAGATTCACCTGACGATAATGTGGCAGT TGACAGGCGGCGGCGTTCTGAGAAAAGCAGACAAAGGAATTATTCCTCAGAAGAAGATTCGGAGTATAAGAAGCGGCACAGGAGTAAAAGGAGGAGCAAG GACGATAAGGATAGCTTATCATACGAACAAGACTTGGATGAGGAGGGGAGAAGAAGTAAGAGTGGCCGGAAAACTCGGCAGCATTTGTCTCCTCACAGAA GCCGTCAAGAGAGGAGGCTTCCATCCGGTGACTCCGATTCTGACAGGCATTATAGAGGTAGTAGACATGGTGGTTCTTCTAGCAGCAGACGGCGTAATCA TTCATCAAACAATGATTTGGATTACGACGACGACCGGTGGGGTTCACGGCGTTCTCATCATCGTGACAAGTATAACTGA
AA sequence Show only first row Show all	>Lus10037279 pacid=23152460 polypeptide=Lus10037279 locus=Lus10037279.g ID=Lus10037279.BGIv1.0 annot-version=v1.0 MEGEEGGGMRLSKRINNGEVDYKTKSGTAWSHNFLNQKPWHPLSYPNQRRKWIAEQTHAQHSRRSEEVAREYAQEQEFFRQTALISQKEKEKMEIMQAVS FMYVRPPGYNPESAKAAEIAEEDKKKQQDTALTDPTDGQSEPLPNKDPPVEEKKKRRPKDAFGRPLPTEEQFEVLKNAPRHDTGVATRSKPFGIEVRNVK CVRCGNFGHQSGDRECPLKDAIMPSEESRLKRDDPLTAIMAQMEPAEPLKWELKQQPGMSPPRGGFDADDPNQQIVAEDIFDEYGGFLSGGGIPELLSNF SPGELKKKKSRSHKRKSKSSNKERRVDEENDLSSSSDSGEWRSKKESRKKKKNKDSDSDSPDDNVAVDRRRRSEKSRQRNYSSEEDSEYKKRHRSKRRSK DDKDSLSYEQDLDEEGRRSKSGRKTRQHLSPHRSRQERRLPSGDSDSDRHYRGSRHGGSSSSRRRNHSSNNDLDYDDDRWGSRRSHHRDKYN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19190			zinc knuckle (CCHC-type) famil...		Lus10037279 [exp]	0	1
AT3G06330			RING/U-box superfamily protein...		Lus10033985 [exp]	3.2	0.7850
AT1G69220		SIK1	Protein kinase superfamily pro...		Lus10036915 [exp]	7.7	0.7207
AT3G13670			Protein kinase family protein ...		Lus10039203 [exp]	10.4	0.7422
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Lus10020435 [exp]	18.3	0.7249
AT1G33060	NAC	ANAC014	NAC 014 (.1.2)		Lus10005143 [exp]	19.9	0.6897
AT1G79020			Enhancer of polycomb-like tran...		Lus10033318 [exp]	20.3	0.7141
AT3G43590			zinc knuckle (CCHC-type) famil...		Lus10008437 [exp]	20.9	0.6885
AT5G05130			DNA/RNA helicase protein (.1)		Lus10039001 [exp]	21.4	0.7084
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Lus10043200 [exp]	22.6	0.7379
AT5G19910		MED31	SOH1 family protein (.1.2)		Lus10021434 [exp]	26.1	0.6715

Compare expression of checked genes

Lus10037279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.