Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31780 657 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035691 [exp] 942 / 0 AT1G31780 995 / 0.0 unknown protein Lus10037281 [exp] 263 / 9e-84 AT1G31780 530 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G236600 [exp] 756 / 0 AT1G31780 996 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF06419 [flax] [poplar] COG6 Conserved oligomeric complex COG6
Representative CDS sequence Show only first row Show all	>Lus10037280 pacid=23152443 polypeptide=Lus10037280 locus=Lus10037280.g ID=Lus10037280.BGIv1.0 annot-version=v1.0 ATGGACGAAAAGCCTGGTTACCAAATGTCTATCATGAAGCATATACTGCTGAATTCCCATATATCTATGTGGGTTCAAATAGAATGTAGGAAGCTGGGTG ATGTGGACAATCCAGAAGTTGGTGATCTTTTAAAGACAGCAGTTCGGTGCCTCAAAGAAAGGCCTGTCCTGTTCAAGTACTGTGCGGAAGAGGTAGCAAA TATGAGGCACAATGCACTGTTCAGAAGATTTATTAGTGCTCTTACTCGTGGTGGACCTGGTGGATTACCAAGACCGATAGAGGTCCATGCTCATGATCCT TTGAGATATGTAGGTGACATGCTGGGATGGTTGCATCAGGCATTGGCATCTGAGCGTGAACTTGTTCTTGCATTACTTGATCCTGATCCTACTGCTGATG CTGAATCAACCACGAACCATGCTGCAAAGGTTTTGGAGAATGGTAATGGAAAGAAAGAATCAGATATGACATTCGTTCTGGACAGAGTTTTTGAAGGAGT GTGCCGGCCTTTTAAAGTTAGAGTGGAACAAGTTTTGCAAGCCCAACCAAGTCTTATAGTAACATATAAACTCAGCAATACTCTAGAATTTTACTGCTAT ACTGTATCTGATTTGCTCGGGAGAGATACAGCTCTCTGTAATACACTGTGGCTACTGAAGGATGCTACACAGAAGACTTTTTTTAACATTTTGAAAAGCC GTGGGGAAAAACTCTTGCGTTATCCTCCTCTTGTAGCTGCTGATCTTTCCCCTCCACAAGCTGTGAGGGATGGTGTGTCTGTTCTACTTGATATAATTGA AACCCATAACAGCACGATGGTTCCTGATTCAGCCAAAACACCTGATTTTGGTCTGGTTATATCCGCATTACTTGACCCCATAATTCAGATGTGTGAGCAA GCTGCTGACGCACATAAGTCAAAGGGTAGTACGCATCTGTCAAGACGGAGGAGCGCTGGCTCAAGCCAAGACAATAATAAATCATCCGTCGAATCACTTT TGTCAAATGGAAACTCTGTGCCATCCTCTCAGAATACTGAAACACCTTCCAAGATATTCCTCGTCAACTGCTTGTGCGCCATCCAGCAACCGTTATCGAG GCATGAGATTGCCGTGGAATACGTGGATAAGCTCGGGGCACTAATAGATAAGCACATAAAAGATCTCGTGGGGAGAGAAGTGAATGCCATTCTTCGAAGA TGTGGCTTGTCGCAGCAAAAGATGTCGCACTTTAGTAATGATGCAGCGTCAGGAGGCCATCGGCCACTAGCAGAGGTCGAAGAGACATCTCCAGCCGCCC TAGCAGAGTGCTTGAGGACTTTCTTCGGGCTTGTGCTGGGGAGCGAGAGTACACTCCCTGAGTTTGAGCAAATGCAGGTGCCCAAATTGCGGTCAGAGAC TTGCGTAAAGGTGGCTAGGTCGCTAGCCGAGACGTATGACCTTATATATACAGCGATAATGGATCCGAAGAATGGGTATGCGGAACCGAAATCACTGGCG AGGCATCCTCCAGATCAAATAAGGACCATCTTGGGCATATAA
AA sequence Show only first row Show all	>Lus10037280 pacid=23152443 polypeptide=Lus10037280 locus=Lus10037280.g ID=Lus10037280.BGIv1.0 annot-version=v1.0 MDEKPGYQMSIMKHILLNSHISMWVQIECRKLGDVDNPEVGDLLKTAVRCLKERPVLFKYCAEEVANMRHNALFRRFISALTRGGPGGLPRPIEVHAHDP LRYVGDMLGWLHQALASERELVLALLDPDPTADAESTTNHAAKVLENGNGKKESDMTFVLDRVFEGVCRPFKVRVEQVLQAQPSLIVTYKLSNTLEFYCY TVSDLLGRDTALCNTLWLLKDATQKTFFNILKSRGEKLLRYPPLVAADLSPPQAVRDGVSVLLDIIETHNSTMVPDSAKTPDFGLVISALLDPIIQMCEQ AADAHKSKGSTHLSRRRSAGSSQDNNKSSVESLLSNGNSVPSSQNTETPSKIFLVNCLCAIQQPLSRHEIAVEYVDKLGALIDKHIKDLVGREVNAILRR CGLSQQKMSHFSNDAASGGHRPLAEVEETSPAALAECLRTFFGLVLGSESTLPEFEQMQVPKLRSETCVKVARSLAETYDLIYTAIMDPKNGYAEPKSLA RHPPDQIRTILGI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31780			unknown protein		Lus10037280 [exp]	0	1
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10018848 [exp]	2.0	0.9017
AT3G26370			O-fucosyltransferase family pr...		Lus10006227 [exp]	6.2	0.8943
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Lus10006364 [exp]	6.7	0.8691
AT5G11980			conserved oligomeric Golgi com...		Lus10026437 [exp]	8.7	0.8813
AT1G10790			unknown protein		Lus10022968 [exp]	8.9	0.8605
AT1G21660			Chaperone DnaJ-domain superfam...		Lus10028548 [exp]	10.6	0.8510
AT2G26680			unknown protein		Lus10019418 [exp]	11.0	0.8501
AT5G19130			GPI transamidase component fam...		Lus10014561 [exp]	11.5	0.8534
AT2G31680		AtRABA5d	RAB GTPase homolog A5D (.1)		Lus10025516 [exp]	11.5	0.8354
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10037430 [exp]	12.0	0.8568

Compare expression of checked genes

Lus10037280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.