Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31780 477 / 1e-165 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035691 [exp] 626 / 0 AT1G31780 995 / 0.0 unknown protein Lus10037280 [exp] 265 / 9e-85 AT1G31780 686 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G236600 [exp] 530 / 0 AT1G31780 996 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF06419 [flax] [poplar] COG6 Conserved oligomeric complex COG6
Representative CDS sequence Show only first row Show all	>Lus10037281 pacid=23152544 polypeptide=Lus10037281 locus=Lus10037281.g ID=Lus10037281.BGIv1.0 annot-version=v1.0 ATGGGGACGATGTCGCAGCAAGGACTAGCTCCAGGGCTGTCTAGGAAGCTGAAGAAGGTGCTCGATTGCCGTACGGACACTCCCGATCTGCTCTCTTCTC TCACCACTCTCTCCAATTTCTACTCCGACAACACTCCTCAGGCTCGCCGGAACCTCAGATCCACCATCGAGAAGCGCTCTCTTCAGATCAACATTGATTT TCTCGAGTCTTCTCACTCTGCCCAGCAGGCGTTGGATCAAGTGGAGCAGGAAGTTAACGCTCTTGCTGAGTGCTGTGACAGGATTGGAAAGGCGTTGAAC AGTTGTAGTGCTAGCACAGCTGATATTATCAGCACCACTGAGAGGTTGAAACAGGACCTGGAAGTTACCACCCAGAGACAAGAGATAGTTTCATGCTTCC TTCGTGACTATCAACTTTCGAGTGAAGAGATTAATGCTCTGAGGGAAGAAGACTTGAACGAAAATTTCTTCAAGGCACTCTCCCATGTACAAGAAATTCA TTCCAATTGTAAAATATTGCTACGAACACATCACCAGCGAGCTGGGTTGGAGTTGATGGATATGATGGCTGTATACCAGGAAGGAGCATATGAACGGCTG TGCAGGTGGGTTCAGATAGAATGTAGGAAACTGGGTGATGTGGACAATCCAGAAGTTGGTGATCTTTTAAAGACAGCAGTTCGGTGCCTCAAAGAAAGGC CTGTCCTGTTCAAGTACTGTGCGGAAGAGGTAGCAAATATGAGGCACAATGCACTGTTCAGAAGATTTATTAGTGCTCTTACTCGTGGTGGACCTGGTGG ATTACCAAGACCGATAGAGGTCCATGCTCATGATCCTTTGAGATATGTAGGTGACATGCTGGGATGGTTGCATCAGGCGTTGGCATCTGAGCGTGAACTT GTTCTTGCATTACTTGATCCTGATCCTACTGCTGATGCTGAATCAACCACGAACCATGCTGCAAAGGTTTTGGAGAATGGTAATGGAAAGAAAGAATCAG ATATGACATTTTGA
AA sequence Show only first row Show all	>Lus10037281 pacid=23152544 polypeptide=Lus10037281 locus=Lus10037281.g ID=Lus10037281.BGIv1.0 annot-version=v1.0 MGTMSQQGLAPGLSRKLKKVLDCRTDTPDLLSSLTTLSNFYSDNTPQARRNLRSTIEKRSLQINIDFLESSHSAQQALDQVEQEVNALAECCDRIGKALN SCSASTADIISTTERLKQDLEVTTQRQEIVSCFLRDYQLSSEEINALREEDLNENFFKALSHVQEIHSNCKILLRTHHQRAGLELMDMMAVYQEGAYERL CRWVQIECRKLGDVDNPEVGDLLKTAVRCLKERPVLFKYCAEEVANMRHNALFRRFISALTRGGPGGLPRPIEVHAHDPLRYVGDMLGWLHQALASEREL VLALLDPDPTADAESTTNHAAKVLENGNGKKESDMTF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31780			unknown protein		Lus10037281 [exp]	0	1
AT2G25800			Protein of unknown function (D...		Lus10013392 [exp]	1.0	0.9695
AT5G47490			RGPR-related (.1)		Lus10007471 [exp]	3.5	0.9478
AT1G50500		ATVPS53, HIT1	HEAT-INTOLERANT 1, ARABIDOPSIS...		Lus10009635 [exp]	3.7	0.9337
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10013342 [exp]	4.1	0.9245
AT4G00440			Protein of unknown function (D...		Lus10028148 [exp]	4.5	0.9360
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10017490 [exp]	4.5	0.9229
AT5G47490			RGPR-related (.1)		Lus10028946 [exp]	4.9	0.9394
AT5G19390			Rho GTPase activation protein ...		Lus10036048 [exp]	6.3	0.9342
AT2G29620			unknown protein		Lus10009543 [exp]	7.3	0.9234
AT3G26370			O-fucosyltransferase family pr...		Lus10036875 [exp]	7.5	0.8993

Compare expression of checked genes

Lus10037281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.