Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45370 475 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT4G19185 471 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G45870 445 / 3e-157 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G75500 234 / 3e-74 WAT1 Walls Are Thin 1 (.1.2) AT3G18200 224 / 1e-70 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT3G53210 209 / 5e-65 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G09380 154 / 1e-43 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G30420 152 / 5e-43 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 150 / 2e-42 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 142 / 2e-39 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035693 [exp] 640 / 0 AT5G45370 502 / 1e-178 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10034776 [exp] 561 / 0 AT4G19185 525 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10033316 [exp] 560 / 0 AT4G19185 520 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10035694 [exp] 526 / 0 AT4G19185 465 / 4e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10038959 [exp] 235 / 5e-75 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10027251 [exp] 231 / 5e-73 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10024301 [exp] 219 / 4e-68 AT1G75500 575 / 0.0 Walls Are Thin 1 (.1.2) Lus10010647 [exp] 176 / 3e-52 AT1G75500 492 / 6e-175 Walls Are Thin 1 (.1.2) Lus10030168 [exp] 171 / 3e-50 AT3G30340 369 / 7e-127 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G237100 [exp] 496 / 4e-177 AT4G19185 476 / 4e-168 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 241 / 4e-77 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.002G029100 [exp] 231 / 4e-73 AT1G75500 578 / 0.0 Walls Are Thin 1 (.1.2) Potri.015G042900 [exp] 229 / 7e-73 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.007G017800 [exp] 203 / 1e-62 AT1G75500 414 / 4e-144 Walls Are Thin 1 (.1.2) Potri.015G073200 [exp] 176 / 2e-52 AT5G40240 254 / 4e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.011G148400 [exp] 160 / 5e-46 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G006600 [exp] 155 / 2e-44 AT1G09380 477 / 2e-169 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 153 / 3e-43 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G453000 [exp] 149 / 5e-42 AT3G30340 369 / 4e-127 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10037284 pacid=23152430 polypeptide=Lus10037284 locus=Lus10037284.g ID=Lus10037284.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCGGCCGCCGTCGGAGGCGGTGGTTTGAATGAGAGAGAAACGCGGCGGAGAGCCCATATGTCAATGGCCCTAGTTCAGCTTATCAGTGGAG GTTATCATGTTATCACCAAAGTCGCTCTTAATGTCGGGATCAATCAACTCGTTTTCTGCGTCTTCCGCGATCTCCTCGCCCTCTCCATTCTCGCCCCCGT TGCCTTTCTCCGGGAGAAGAGGAATCGACCACCCATGACCAGGAGCTTGCTCATATCATTTTTCTTTCTTGGCTTGACTGGGATTTTTGGCAACCAGCTT TTGTTTCTTCTCGGCCTTAGCTACACAAATCCAACTTATGCTGCAGCAATACAGCCTTCAATACCAGTTTTCACATTTCTTTTGGCTGTGACGATGGGTA CAGAAAGAGTCAATTTGCTCAAAGCTGAAGGTCAAGCTAAGATTCTAGGCACTGCCGTCTGTGTTTCTGGTGCCATTTTGATGGTTCTTTTTCGAGGTCC AGCTATAATTGGGCAGGCGGAATCTGACTTTGCTTCCAGCGAAATAAGAGCTAGGGGTCAACCGGAGCCTGTTGGTTGGTTTGTATCCAACCTTCTGGAC CTTGGTTTAGGAACTTGGCATCTTGGGGTTCTATGCTTGATTGGAAATTGTATGTGCATGGCAGCTTTTCTTGCCATTCAGGCTCCGGTTTTGGCAAAAT ATCCTGCCAGCATTTCAGTCACCGCATATTCTTATGGTTTTGGTGCTGTATTAATGGTAGTTACAGCATTCTTTATGACCAATGAATCAACGAACTGGAG CTTGACTCAGTCGGAGTTATTGGCTGTGCTTTATGCAGGAATTATCGCATCTGCTCTTAACTATGGACTTCTCACATGGTGCAACAAGATCATAGGGCCT GCTTTGGTAGCTCTATACAATCCACTTCAACCTGCTGCATCCGCCCTTCTCTCAAGAATTTTCCTTGGAAGCACTATTTATTTGGGAAGGTAG
AA sequence Show only first row Show all	>Lus10037284 pacid=23152430 polypeptide=Lus10037284 locus=Lus10037284.g ID=Lus10037284.BGIv1.0 annot-version=v1.0 MAASAAVGGGGLNERETRRRAHMSMALVQLISGGYHVITKVALNVGINQLVFCVFRDLLALSILAPVAFLREKRNRPPMTRSLLISFFFLGLTGIFGNQL LFLLGLSYTNPTYAAAIQPSIPVFTFLLAVTMGTERVNLLKAEGQAKILGTAVCVSGAILMVLFRGPAIIGQAESDFASSEIRARGQPEPVGWFVSNLLD LGLGTWHLGVLCLIGNCMCMAAFLAIQAPVLAKYPASISVTAYSYGFGAVLMVVTAFFMTNESTNWSLTQSELLAVLYAGIIASALNYGLLTWCNKIIGP ALVALYNPLQPAASALLSRIFLGSTIYLGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45370			nodulin MtN21 /EamA-like trans...		Lus10037284 [exp]	0	1
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Lus10027813 [exp]	4.0	0.9533
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10033379 [exp]	4.2	0.9391
AT5G45370			nodulin MtN21 /EamA-like trans...		Lus10035693 [exp]	7.1	0.9404
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10002130 [exp]	7.6	0.9488
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10003270 [exp]	8.8	0.9286
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10007497 [exp]	10.1	0.9448
AT1G18200		AtRABA6b	RAB GTPase homolog A6B (.1)		Lus10042009 [exp]	11.3	0.9407
AT2G17800		ARAC1, ATGP2, A...	RHO-RELATED GTPASES FROM PLANT...		Lus10028428 [exp]	12.2	0.8644
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Lus10005676 [exp]	12.5	0.9258
AT1G68260			Thioesterase superfamily prote...		Lus10031959 [exp]	13.0	0.9250

Compare expression of checked genes

Lus10037284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.