Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19180 761 / 0 GDA1/CD39 nucleoside phosphatase family protein (.1) AT4G19170 188 / 2e-50 CCD4, NCED4 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) AT2G02970 155 / 9e-40 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14250 146 / 4e-37 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14230 145 / 2e-36 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14240 140 / 3e-35 GDA1/CD39 nucleoside phosphatase family protein (.1.2.3.4) AT1G30100 104 / 8e-23 ATNCED5, NCED5 nine-cis-epoxycarotenoid dioxygenase 5 (.1) AT3G14440 100 / 1e-21 SIS7, ATNCED3, STO1, NCED3 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) AT1G78390 100 / 3e-21 ATNCED9, NCED9 nine-cis-epoxycarotenoid dioxygenase 9 (.1) AT3G63520 96 / 4e-20 ATNCED1, ATCCD1, CCD1 carotenoid cleavage dioxygenase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034777 [exp] 1058 / 0 AT4G19180 879 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10033317 [exp] 1051 / 0 AT4G19180 886 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10035695 [exp] 935 / 0 AT4G19180 660 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10027686 [exp] 262 / 4e-77 AT4G19180 296 / 8e-92 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10039953 [exp] 251 / 5e-74 AT4G19180 267 / 1e-81 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10035696 [exp] 236 / 8e-67 AT4G19170 813 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10012825 [exp] 143 / 1e-35 AT2G02970 605 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10030470 [exp] 143 / 1e-35 AT2G02970 613 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10008443 [exp] 120 / 7e-29 AT4G19170 315 / 1e-102 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G236900 [exp] 914 / 0 AT4G19180 840 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.015G079900 [exp] 302 / 9e-92 AT4G19180 276 / 6e-84 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.005G069100 [exp] 217 / 3e-60 AT4G19170 812 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.019G093400 [exp] 209 / 1e-57 AT4G19170 803 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.008G086400 [exp] 133 / 2e-32 AT2G02970 635 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.009G151900 [exp] 132 / 5e-32 AT4G19170 548 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G152200 [exp] 132 / 8e-32 AT4G19170 546 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G152300 [exp] 130 / 2e-31 AT4G19170 539 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.010G169100 [exp] 130 / 3e-31 AT2G02970 606 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.009G157500 [exp] 111 / 3e-25 AT2G02970 330 / 9e-107 GDA1/CD39 nucleoside phosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF01150 [flax] [poplar] GDA1_CD39 GDA1/CD39 (nucleoside phosphatase) family CL0108 [flax] [poplar] PF03055 [flax] [poplar] RPE65 Retinal pigment epithelial membrane protein
Representative CDS sequence Show only first row Show all	>Lus10037285 pacid=23152453 polypeptide=Lus10037285 locus=Lus10037285.g ID=Lus10037285.BGIv1.0 annot-version=v1.0 ATGGTGTTTGATAAAATAGCTGCTGCGGTTTCCGCCGCGACCAGTCGTCTCTCGTTATCTGGATCAAACTCTGCTTCCGTCGCATATATGTCAACTGGGG TATCCCCACCACCAACAGACCCCGTTGATCATCATGGATTTCCTTTCCCTAATCCTGCAAACAACAAGGCCAATTTGAGACTTTCTTCATCCTTACAAGA CTTCTCATCTTATAGGCGACTTGATCCTGAGGAAGCTGATCCTCTCAAGTTTGGAATTGATAAGAACATTCGTTTGTTGCAGAGAGAAAATGCTCCTCCG AGTTTCTCGAAAGAGAAAGGACAACCAGCTGCGGCACCTTTTGTTAGAACGAAATGGGTTCGGTCGATGATGGTTTTCTTGTGCCTGTTGCTGTTCATTT GCTTAACTTATTTGATCGCCGTTTACTCATATTCTTATTGGTCTCAAGGATCATCCAAGTTCTATGTTGTTCTCGACTGTGGAAGTACGGGGACTCGAGT GTTTGTGTATCAGGCATCCATTGATAGCAAAAAACATGGGAGTTTACCCATCGTGGTGAAATCTTTTTCAGAGGGTGTTTCCCGTCAGCCAACGGGACGA GCATATGACCGGATGGAGACTGAACCTGGACTTCATATGTTGGTGCATAATACCTCTGGCTTAAAGTCTGCGCTGAAACCACTTCTTAAGTGGGCGCAGA GGCAAATTCCAGAGGATGCACATCAATCAACTTCAGTTTTTCTTTATGCTACAGCTGGGGTACGCCGGCTTCCTGGATCAGATTCAAAGTGGCTTTTAGA TAAATCATGGTCTATAATGAAGGAATCTCCTTTCCTGTGTCGAAGAGAATGGATTAAGATTATCAGTGGAATGGAGGAAGCATACTTTGGATGGATAGCT TTAAATTACAGAACTGATGTTTTGGGAGCCAGGCCAAAGAGACCAACATTTGGTACTCTTGACCTGGGGGGCTCATCACTACAGGTCACATTTGAGGGTG ATAAACAGTCCCGTAATAAGACTAACTTAAACCTCAGAATTGGAGCAGTTAATCATCGCCTCAGTGCGTATTCTCTTGCCGGGTATGGTTTAAATGATGC ATTTGACAAGTCTGTTTTTCATATACTAAAGAGCCTTCCAGATGCCGGTCTAAGCAGGATTCCAGAAATTAAGCACCCTTGCCTGCATTCTGGCTATAAG GAGGAATATATATGCTCCCTTTGTGGCTCTGACAAACAAGAAGGTGTTAGTCCTATTATCAGAGGAAGGCAGTTAGGCAAGGCAGCCAAGGCAGGAGTGA CAGTTCAGCTTATTGGTGCTCCAAACTGGGAGGAATGCAGTGCTCTTGCTAAAAATGTTGTTAATTTATCTAAATGGTCAACTAAAGGTCCGGCTTTAGA CTGTGATCTGCAACCCTGTGCACTACCTGAGAGTCTGCCCCGCCCTTACGGACAGTTCTATGCCATGTCTGGCTTTTTTGTGGTATACCGATTCTTTAAC CTCTCTGCAGAAGCTTCCCTTGATGATGTATTGGAAAAAGGCAGAGCATTCTGCGAAAGGACTTGGAATGATGCAAAAACTAGTGTTTCTCCACAGCCTT TTATTGAACAATACTGCTTTCGGGCACCATACATAGTATCATTACTGAGAGAGGGCTTACACATCACTGATAATCAAATTGTTATTGGTTCTGGTAGTAT AACTTGGACACTTGGGGTTGCTCTGCTGGAAGCTGGGAGAATTTTTTCAACCAGGTTAAGGCTTCACAAGTATGATATCTTCCATATGAACTTACATCCA ATGGTTCTCCTTTCCATTTTGTGCATGTCAGTGTTCATCCTGCTGTGTGCATTATCATGTGTTGGCAAATGTGCTGGCAATTGGATTCCAAGGTTCTTCC GGAGACCATATCTTCCACTTTTCAGGCATAACAGTGCATCGACCACATCTGTTCTCAACATTCCATCTCCCTTCCGTTTCCAACGATGGAGTCCTATCAA TACTGGTGATGGAAGAGTGAAGTTGCCATTGAGTCCAACAGTAGCAGGAGGGGAACATCGACCATTTGGATTGGGACATGGTCTGGGCGGGAGTGGTGGG ATCCAACTTATGGAACCTGCAACAATATACTCAGCAGGCAGCAGTGTTTCACATAGCTATTCCTCCAACAGAATGGGGCAGATGTTCGTGAGCGGAAACT TAGCTTCATTTTGGTCCCCTCACAGAAGTCAGATGCGTCTCCAGAGTAGGAGATCACAGTCCAGAGAAGACCTGACTTCTTCCCTCGCCGATGCACATAC TGTCAAGGGCGGCGACGTTGAGACACTCAACCGCCACGATTTCGATGGGAAGCTGGTGATGAGTATGACGGCGCACCCGAAAACTGATCTCCAAACGGGA GAGACCTTCGCCTTCAGGTATGGCCCGATGCCGCCGTTTCTAACTTATTTCCGGTTCGACGCTGACGGAAACAAGCAGCCGGATGTTCCTATATTCTCGA TGGTCAGCCCTTCTTTTCTCCACGATTTCGCGATCACGCAGAAATACGCCTTGTTTGCTGAGATCCAGATCGGGATGAACCCGATGGATATGGTGTTCGG AGGCGGGTCTCCCGTCGGAGCTGACCCGAAGAAGGTCCCTCGGGTGGGGATAATCCCGAGGTTATTAGGAAAAGGAAACTTTTCTTCTCCCTCAATTTCC CGCCAAGACAATACGCACCGCTTCACTAATCTACTGAAACGAGGAAGAGCGTTGCTAGCTACACGACGCCGTTCCGACCAAATGGATAACAACCTCGCAG CTGGCAATCCAGCTCCTGAGAATTCAGTAACAACATTTCCAGACCTGCAAACATTTCCAGACCTGCAATGTTTGCAGAGATTTTGA
AA sequence Show only first row Show all	>Lus10037285 pacid=23152453 polypeptide=Lus10037285 locus=Lus10037285.g ID=Lus10037285.BGIv1.0 annot-version=v1.0 MVFDKIAAAVSAATSRLSLSGSNSASVAYMSTGVSPPPTDPVDHHGFPFPNPANNKANLRLSSSLQDFSSYRRLDPEEADPLKFGIDKNIRLLQRENAPP SFSKEKGQPAAAPFVRTKWVRSMMVFLCLLLFICLTYLIAVYSYSYWSQGSSKFYVVLDCGSTGTRVFVYQASIDSKKHGSLPIVVKSFSEGVSRQPTGR AYDRMETEPGLHMLVHNTSGLKSALKPLLKWAQRQIPEDAHQSTSVFLYATAGVRRLPGSDSKWLLDKSWSIMKESPFLCRREWIKIISGMEEAYFGWIA LNYRTDVLGARPKRPTFGTLDLGGSSLQVTFEGDKQSRNKTNLNLRIGAVNHRLSAYSLAGYGLNDAFDKSVFHILKSLPDAGLSRIPEIKHPCLHSGYK EEYICSLCGSDKQEGVSPIIRGRQLGKAAKAGVTVQLIGAPNWEECSALAKNVVNLSKWSTKGPALDCDLQPCALPESLPRPYGQFYAMSGFFVVYRFFN LSAEASLDDVLEKGRAFCERTWNDAKTSVSPQPFIEQYCFRAPYIVSLLREGLHITDNQIVIGSGSITWTLGVALLEAGRIFSTRLRLHKYDIFHMNLHP MVLLSILCMSVFILLCALSCVGKCAGNWIPRFFRRPYLPLFRHNSASTTSVLNIPSPFRFQRWSPINTGDGRVKLPLSPTVAGGEHRPFGLGHGLGGSGG IQLMEPATIYSAGSSVSHSYSSNRMGQMFVSGNLASFWSPHRSQMRLQSRRSQSREDLTSSLADAHTVKGGDVETLNRHDFDGKLVMSMTAHPKTDLQTG ETFAFRYGPMPPFLTYFRFDADGNKQPDVPIFSMVSPSFLHDFAITQKYALFAEIQIGMNPMDMVFGGGSPVGADPKKVPRVGIIPRLLGKGNFSSPSIS RQDNTHRFTNLLKRGRALLATRRRSDQMDNNLAAGNPAPENSVTTFPDLQTFPDLQCLQRF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10037285 [exp]	0	1
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10030301 [exp]	1.0	0.8902
AT4G17960			unknown protein		Lus10040087 [exp]	3.5	0.8330
AT4G37820			unknown protein		Lus10019253 [exp]	4.2	0.8632
AT1G77610			EamA-like transporter family p...		Lus10029663 [exp]	4.9	0.8580
AT5G20280		SPSA1, ATSPS1F	sucrose-phosphate synthase A1,...		Lus10038119 [exp]	5.9	0.8462
AT5G63180			Pectin lyase-like superfamily ...		Lus10013667 [exp]	6.7	0.8424
AT5G63180			Pectin lyase-like superfamily ...		Lus10013668 [exp]	7.3	0.8469
AT1G10790			unknown protein		Lus10022968 [exp]	8.4	0.8490
AT5G11110		SPSA2, KNS2, AT...	sucrose-phosphate synthase A2,...		Lus10008056 [exp]	12.4	0.8107
AT1G22610			C2 calcium/lipid-binding plant...		Lus10001538 [exp]	12.5	0.8280

Compare expression of checked genes

Lus10037285 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.