Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19170 236 / 3e-75 CCD4, NCED4 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) AT3G63520 111 / 7e-29 ATNCED1, ATCCD1, CCD1 carotenoid cleavage dioxygenase 1 (.1) AT3G24220 99 / 1e-24 ATNCED6, NCED6 nine-cis-epoxycarotenoid dioxygenase 6 (.1) AT1G30100 95 / 7e-23 ATNCED5, NCED5 nine-cis-epoxycarotenoid dioxygenase 5 (.1) AT1G78390 91 / 2e-21 ATNCED9, NCED9 nine-cis-epoxycarotenoid dioxygenase 9 (.1) AT4G18350 84 / 4e-19 ATNCED2, NCED2 nine-cis-epoxycarotenoid dioxygenase 2 (.1) AT3G14440 83 / 1e-18 SIS7, ATNCED3, STO1, NCED3 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) AT4G32810 51 / 1e-07 MAX4, CCD8, ATCCD8 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035696 [exp] 319 / 2e-107 AT4G19170 813 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10029513 [exp] 108 / 8e-28 AT3G63520 901 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10016410 [exp] 102 / 1e-25 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10019710 [exp] 100 / 6e-25 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10042481 [exp] 94 / 1e-24 AT1G78390 271 / 2e-88 nine-cis-epoxycarotenoid dioxygenase 9 (.1) Lus10026185 [exp] 90 / 3e-21 AT3G14440 682 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Lus10023673 [exp] 89 / 5e-21 AT3G24220 706 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10009513 [exp] 74 / 2e-15 AT3G63520 219 / 4e-64 carotenoid cleavage dioxygenase 1 (.1) Lus10042829 [exp] 69 / 5e-14 AT3G63520 207 / 2e-59 carotenoid cleavage dioxygenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093400 [exp] 248 / 7e-80 AT4G19170 803 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.005G069100 [exp] 243 / 8e-78 AT4G19170 812 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G152200 [exp] 148 / 5e-42 AT4G19170 546 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G151900 [exp] 147 / 8e-42 AT4G19170 548 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G152300 [exp] 145 / 2e-41 AT4G19170 539 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.001G265400 [exp] 107 / 3e-27 AT3G63520 908 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.009G060500 [exp] 106 / 5e-27 AT3G63520 918 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.001G265900 [exp] 104 / 3e-26 AT3G63520 880 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.001G393800 [exp] 103 / 7e-26 AT3G14440 883 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.001G265600 [exp] 100 / 7e-25 AT3G63520 878 / 0.0 carotenoid cleavage dioxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03055 [flax] [poplar] RPE65 Retinal pigment epithelial membrane protein
Representative CDS sequence Show only first row Show all	>Lus10037286 pacid=23152256 polypeptide=Lus10037286 locus=Lus10037286.g ID=Lus10037286.BGIv1.0 annot-version=v1.0 ATGTCGGTGGAGCACACGATGGAAAGGCTTGATCTAGTCCATGCGCAGGTGGAGAAAGTCCGGATAGATTTGAAAACAGGGACGGTTTCCCGGGTCCCGA TATCGGCCCGGAATCTGGATTTCGGGGTGGTGAATCCGGGTTACATCGGGAGGAAAAACCGGTTCGTTTACGCCGGAGTCGGGGATCCGATGCCGAAGAT ATCGGGTGTAGTGAAATTGGACGTCGGAGATGAAATGGGGCGGGAAAGGATGGAGAGCACGGTTGCGTGCAGGATGTTCGGGCCGGGTTGTTTCGGCGGG GGGGCGCCATTTTTTGTGGCTAAGGATCCGGAGGATCCGAATGCGGAGGAGGATGATGGGTATTTGGTGTCGTATGTTCACGACGAGATAAATGGGGAGT CGAAATTTCTGGTTATGGACGCCAAGTCGCCGGAGCTTGAGATTGTTGCAGCGGTGAGACTCCCACGGCGGGTTCCGTACGGATTCCATGGGCTTTTCGT GAAAGAGTGCGACCTCCGAAAGTTAAGATAA
AA sequence Show only first row Show all	>Lus10037286 pacid=23152256 polypeptide=Lus10037286 locus=Lus10037286.g ID=Lus10037286.BGIv1.0 annot-version=v1.0 MSVEHTMERLDLVHAQVEKVRIDLKTGTVSRVPISARNLDFGVVNPGYIGRKNRFVYAGVGDPMPKISGVVKLDVGDEMGRERMESTVACRMFGPGCFGG GAPFFVAKDPEDPNAEEDDGYLVSYVHDEINGESKFLVMDAKSPELEIVAAVRLPRRVPYGFHGLFVKECDLRKLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10037286 [exp]	0	1
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015749 [exp]	1.0	0.8944
AT2G04740			ankyrin repeat family protein ...		Lus10006408 [exp]	1.4	0.8884
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10032062 [exp]	3.3	0.7872
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10006342 [exp]	3.7	0.8186
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10004214 [exp]	3.9	0.8508
AT1G33970			P-loop containing nucleoside t...		Lus10003732 [exp]	5.5	0.8324
AT1G61550			S-locus lectin protein kinase ...		Lus10037730 [exp]	11.3	0.8051
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10004917 [exp]	11.8	0.7900
AT1G27170			transmembrane receptors;ATP bi...		Lus10002232 [exp]	13.0	0.7839
AT3G28480			Oxoglutarate/iron-dependent ox...		Lus10032184 [exp]	14.3	0.7278

Compare expression of checked genes

Lus10037286 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.