Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31790 82 / 3e-18 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74400 62 / 3e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18520 62 / 5e-11 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G34400 60 / 2e-10 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G14820 58 / 1e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55740 57 / 3e-09 CRR21 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66500 56 / 3e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 56 / 5e-09 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 55 / 1e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G19191 54 / 2e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035697 [exp] 201 / 8e-63 AT1G31790 226 / 1e-69 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000349 [exp] 87 / 1e-19 AT3G09510 49 / 5e-06 Ribonuclease H-like superfamily protein (.1) Lus10012727 [exp] 65 / 5e-12 AT5G65530 457 / 8e-157 Protein kinase superfamily protein (.1) Lus10036375 [exp] 61 / 9e-11 AT2G46050 435 / 7e-146 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10004751 [exp] 59 / 7e-10 AT5G55740 577 / 0.0 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006174 [exp] 57 / 3e-09 AT1G71460 459 / 2e-157 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10041049 [exp] 56 / 4e-09 AT1G71460 796 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10006123 [exp] 56 / 6e-09 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004987 [exp] 56 / 8e-09 AT3G46790 715 / 0.0 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G155400 [exp] 67 / 5e-13 AT5G55740 706 / 0.0 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G170300 [exp] 64 / 6e-12 AT4G18520 717 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 59 / 6e-10 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.011G052300 [exp] 57 / 2e-09 AT2G33760 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 57 / 2e-09 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G043400 [exp] 56 / 5e-09 AT2G33760 775 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G187800 [exp] 56 / 5e-09 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G007800 [exp] 56 / 5e-09 AT3G22150 1088 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G022500 [exp] 56 / 6e-09 AT5G66500 582 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G086200 [exp] 55 / 1e-08 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10037287 pacid=23152362 polypeptide=Lus10037287 locus=Lus10037287.g ID=Lus10037287.BGIv1.0 annot-version=v1.0 ATGGACGATGGTGGAAGCACTGCTCGACAAGTCCATGCAATTGCCATCAAATTACAGGGGGGATTGAATAGGAAGGTTGTTATGATCCAGTGTGGATTGA TTAAGATGTACGGCAGGTGTGGGTTGGTCCGGTATTCAGAACAGGTATTCGACAGGACGCTCACTGACAAGCAGAGATGTAATGCGCGTTGGAATACGAT GCTAATGTCCTATTTGCAGAATGGGTTATATGTGGAGGCGTTCAAGCTTCTTTGCAAGATGAAAGCAGCTGCAGTAGAGGTGACTGAGTCATTGGTAAAC AAAGTCAGAATTGCCTGTGGCTCTGTAAAGGCTGAAGAACAGGGGAAACTGGTGGCCAAACCATCTGTTCTTGTTGCAGGGGAATTAGCATCCTCAATCC GATGCCCTGTTCTTGTCATGACCGACTGCGTCTCCCTTGTGAGGCTCCTGCATGATGACTCGAGCTCTTTCCACTGGGAGGGAGTGCCTTTAACTACTAA GATCTCGCGGAGTTTACGTACATCCTCTTATATCACGATTATGTTCCTCCCGCGCAAGGAGAATTTCAAAGTTGATTGGGTTGCTCGTAACTCCTCTGCT GAATCTGTAGCGTTGGATTGGATTGTTATGTTACCGTCCTCTAAGGTGTAA
AA sequence Show only first row Show all	>Lus10037287 pacid=23152362 polypeptide=Lus10037287 locus=Lus10037287.g ID=Lus10037287.BGIv1.0 annot-version=v1.0 MDDGGSTARQVHAIAIKLQGGLNRKVVMIQCGLIKMYGRCGLVRYSEQVFDRTLTDKQRCNARWNTMLMSYLQNGLYVEAFKLLCKMKAAAVEVTESLVN KVRIACGSVKAEEQGKLVAKPSVLVAGELASSIRCPVLVMTDCVSLVRLLHDDSSSFHWEGVPLTTKISRSLRTSSYITIMFLPRKENFKVDWVARNSSA ESVALDWIVMLPSSKV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31790			Tetratricopeptide repeat (TPR)...		Lus10037287 [exp]	0	1
AT4G16260			Glycosyl hydrolase superfamily...		Lus10027479 [exp]	3.2	0.6544
AT1G19640		JMT	jasmonic acid carboxyl methylt...		Lus10025993 [exp]	4.9	0.6987
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10021222 [exp]	5.5	0.7285
					Lus10034684 [exp]	17.7	0.6649
AT3G63390			unknown protein		Lus10018745 [exp]	30.9	0.6179
					Lus10039897 [exp]	32.0	0.6741
AT2G30900		TBL43	TRICHOME BIREFRINGENCE-LIKE 43...		Lus10020786 [exp]	41.9	0.6659
AT3G50120			Plant protein of unknown funct...		Lus10019324 [exp]	47.0	0.6606
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Lus10029163 [exp]	49.4	0.6314
AT3G27470			Protein of unknown function (D...		Lus10022287 [exp]	50.1	0.6434

Compare expression of checked genes

Lus10037287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.