Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31790 80 / 6e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53360 58 / 3e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G15510 52 / 2e-07 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G71420 52 / 3e-07 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09950 50 / 7e-07 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55740 50 / 1e-06 CRR21 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G31430 49 / 2e-06 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G77170 49 / 2e-06 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 49 / 3e-06 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G06150 48 / 5e-06 bHLH bHLH089, EMB1444 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035697 [exp] 318 / 2e-107 AT1G31790 226 / 1e-69 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014950 [exp] 62 / 1e-10 AT5G52850 683 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026460 [exp] 59 / 1e-09 AT1G15510 1030 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027408 [exp] 52 / 2e-07 AT2G29760 405 / 5e-133 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025009 [exp] 52 / 3e-07 AT1G15510 1020 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 50 / 1e-06 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028855 [exp] 50 / 1e-06 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031661 [exp] 49 / 2e-06 AT2G29760 427 / 3e-141 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032091 [exp] 49 / 2e-06 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G103600 [exp] 55 / 2e-08 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G058700 [exp] 52 / 2e-07 AT1G15510 1113 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G066100 [exp] 51 / 3e-07 AT5G13270 977 / 0.0 REQUIRED FOR ACCD RNA EDITING 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G006800 [exp] 51 / 5e-07 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.018G071800 [exp] 51 / 5e-07 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G111300 [exp] 51 / 5e-07 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G047600 [exp] 50 / 9e-07 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G108000 [exp] 49 / 1e-06 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.016G051300 [exp] 49 / 2e-06 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G245300 [exp] 48 / 5e-06 AT3G22690 570 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037288 pacid=23152473 polypeptide=Lus10037288 locus=Lus10037288.g ID=Lus10037288.BGIv1.0 annot-version=v1.0 ATGGCGATTTCAACTAAATCGGTGACAGATATCAGAAATCTGCACTCAACTTACTCCTCATGCTGCCAACCCAACAACCAGAAACCATCAGCTCCACTAC AACACCACCACTTGCATCTAACTCATCAGAAACCCACGCCGCCGTCCACCCTAGATTCTCCTTCTCGGCGGCCAACCAGGAGAAAACCCGCCGCCTGTAC CTCCGATATCCTTCGTCTCTTCCACAGCTTAGATTTCCCTTTACTACCCGACCTCTACGTCTGCCTCATCAAAGAATGCACCTTCCAACGCGACTCAGCG TCCGCTTTCCGACTCCACGCCCACTTCACCCATCAACAACCTTCTGCTGATTCACCTGTCCTCCTCCTCAACCGTCTGCTCCTCATGCACGTTTCTTGTG GCCACTTGCAAATCGCCCGCCAACTGTTCGACGAAATGCCTCTTCGTGATAGGCATGCCATCTCTTGGGCCATACTCGTTAGTGCTTACTCCCATAATGC TCAGTATGATGAGACTATTCTCCTCTTCTTGCAAATGTTGCTTGATGATGATGACCACTGCCACCAGTTGATGCAGTTCCCCAAGGTTGCTATGGTTTCC ATTCTCAAGGCATGTATGTACGCTGATACCAATGGCTTAGCAAAGCAGCTTCTTGGGGGTTTGATAAAGTTTAGTCCCACTTTTGACGACGATCTTGGTG CCTCTTTGGCTGATTTCTATGTGAATTTTGATCGTGGAGTCTCTCACCACAGTTTAACAACCAATCTGTCTGGGCAAGTAAGATTGAAAATAAGTATAAA GAAGGGCGCTTTGCAGAAGTAA
AA sequence Show only first row Show all	>Lus10037288 pacid=23152473 polypeptide=Lus10037288 locus=Lus10037288.g ID=Lus10037288.BGIv1.0 annot-version=v1.0 MAISTKSVTDIRNLHSTYSSCCQPNNQKPSAPLQHHHLHLTHQKPTPPSTLDSPSRRPTRRKPAACTSDILRLFHSLDFPLLPDLYVCLIKECTFQRDSA SAFRLHAHFTHQQPSADSPVLLLNRLLLMHVSCGHLQIARQLFDEMPLRDRHAISWAILVSAYSHNAQYDETILLFLQMLLDDDDHCHQLMQFPKVAMVS ILKACMYADTNGLAKQLLGGLIKFSPTFDDDLGASLADFYVNFDRGVSHHSLTTNLSGQVRLKISIKKGALQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31790			Tetratricopeptide repeat (TPR)...		Lus10037288 [exp]	0	1
AT5G17790		VAR3	VARIEGATED 3, zinc finger (Ran...		Lus10003872 [exp]	3.3	0.8500
AT5G15390			tRNA/rRNA methyltransferase (S...		Lus10032993 [exp]	7.6	0.8173
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10010060 [exp]	9.6	0.7952
AT1G64810		APO1	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10038736 [exp]	10.3	0.7324
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Lus10024350 [exp]	20.5	0.7851
AT5G50240		PIMT2, AtPIMT2	Arabidopsis thaliana protein-l...		Lus10033049 [exp]	23.0	0.7486
					Lus10029579 [exp]	24.2	0.7715
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10039594 [exp]	32.8	0.7681
AT1G14410		WHY1, ATWHY1, P...	A. THALIANA WHIRLY 1, ssDNA-bi...		Lus10037206 [exp]	32.9	0.7867
AT3G56330			N2,N2-dimethylguanosine tRNA m...		Lus10030535 [exp]	33.9	0.7820

Compare expression of checked genes

Lus10037288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.