Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02920 61 / 3e-10 F-box/RNI-like superfamily protein (.1) AT3G28410 59 / 4e-09 F-box/RNI-like superfamily protein (.1) AT5G02700 58 / 7e-09 F-box/RNI-like superfamily protein (.1) AT5G53840 56 / 5e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) AT2G39415 50 / 1e-07 F-box family protein (.1) AT5G02930 54 / 2e-07 F-box/RNI-like superfamily protein (.1) AT3G18150 52 / 7e-07 RNI-like superfamily protein (.1) AT4G09920 51 / 1e-06 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT1G67390 51 / 1e-06 F-box family protein (.1) AT4G10400 50 / 2e-06 F-box/RNI-like/FBD-like domains-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029083 [exp] 328 / 8e-107 AT1G67390 54 / 6e-08 F-box family protein (.1) Lus10029003 [exp] 276 / 2e-85 AT3G49030 57 / 3e-08 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Lus10034290 [exp] 252 / 2e-78 AT5G02910 53 / 2e-07 F-box/RNI-like superfamily protein (.1.2) Lus10003696 [exp] 198 / 2e-60 AT3G51530 52 / 1e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10037261 [exp] 189 / 4e-57 AT5G02920 65 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10034430 [exp] 154 / 3e-43 ND / Lus10000650 [exp] 140 / 2e-37 ND / Lus10035698 [exp] 135 / 7e-37 ND / Lus10036905 [exp] 127 / 2e-34 AT5G22660 54 / 1e-08 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G024200 [exp] 60 / 3e-09 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.015G002100 [exp] 58 / 7e-09 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 54 / 8e-08 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.013G146800 [exp] 53 / 5e-07 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.001G395000 [exp] 52 / 6e-07 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2) Potri.015G011200 [exp] 50 / 2e-06 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.014G039700 [exp] 50 / 3e-06 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.011G136200 [exp] 50 / 3e-06 AT1G56400 215 / 2e-64 F-box family protein (.1.2) Potri.011G104200 [exp] 49 / 4e-06 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.015G002001 [exp] 48 / 9e-06 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037289 pacid=23152370 polypeptide=Lus10037289 locus=Lus10037289.g ID=Lus10037289.BGIv1.0 annot-version=v1.0 ATGAAGAAGAATGAGCAATCCGTCGATCGAATCTCTCAACTTCCGGACGAGATCATCTACCTCATCCTTCAAAGCTTGGACTTGCATAAGTCGGCGGCAA GAACAAGCGTCTTGTCCAGAAGATGGCTCCACCTGTGGCGCTCTTACCCTGTCGTCGAGTTTCAGGGTTATTACGGGAGAAAGAGCTTCAAGTTCCAGAG CTTTGCCGCTGCTACTTCCAATAGGCTGCAAGCAGTACCATTACTTTTGGACTCATTCACCGTCGTACTGCAACAATCCAAAAATCTCGGCCAGGAATTC TACCAGTTGCTGTCATCCGCATCGGTAGGGGTCGACAACGGCGGCAGATCCCCTCTTAATGTTGTGGTTAAAAATTTCGGTTCATCGATAATGTTCGAAG GGGGAATGCTTTTGAATTGCGGCCGCACCAAATTTCTCCAACTAGAAGGTTTCGACCTAAGTAGATTGCACAAGACTTGTCTGGACAATCTTCAGCAACT CGATCTTCAATTTGTCGTGGTTAGCCAAGAGAGTTTCCCGAGCTGCCTAGCTAATTCTCCTCGTCTTAAGAAATTGAGTTTGAAATATATTCGCGGAATT CATAACATGGTCATCTCTGCTTCTAATTTTCCCAGCTTGAGATCTCTCTTCTTAGATGGACGACTTGACCTCCAGCTCAGCTCAGCCCCTCACCTCCAGA GTTTAAGCTTCCGAGGTAGGAACCTGAGTGTTGTTACTTCATCGTCAGCTCCCAATGTAAAAAAATTAGACTTTGAACCCCTGGGTGAACTTAGGGGCAG AGAAATCAGTGACTCGATTTCAAAGTTGCCATCTCTCAAGTCTCTACTCTTCAATTCGTTGAGCATCCGAGGCAATGATGGGACGCAGTTTGAGATTGAT GCCCCTAATCTGGTAATTCTAACCATCAAAACCCGTGGGTTCAAAATCAACCCCATTGTTGTCAGTATGGCTCCTAGCTGCCGATGTGTAGTTGCTTCTT CAATTAGATCATACATGATAACAAAAAGCTGGTTTCTTGACTTGAGGGAGCGTCTCACGTCATTAGCTACTTCATTCCGCCACCTGGTTTTCGAGTTGGA TTTCCCGTATTTTCATAAGGTGTCTGATTTGGACTTGAGTCAAGTTGGATGTGAATCTCCTCCTCTAATGGTCCAACATTTACACTTGGGAACAAATATT TTGCCTTTGGGAGCGGCGAACCTAGAGAAGCAAGCTGATAAAACTCTTCTTCTCGATGCTCTATTATCGACATTTCATCCAAAGATGGTATCTGTAGCTC AACGTCAACACTCATGTCACAGAAGGAGTCTATTCTCATATATCTCCAACCAAATTGAGATGAAAAACCTGCGGAAATGTTGCAACAACGAAAAGTGTTG GCGTCATCAATTTAAAGATGCTGAGATAAGGAGCGTCACAGTTGATGATATTTTAACAATTGATAAGTCTATGACTTCTCAACCATCGATTGCCATGTTT ATTTCTTTTTCCTCATGA
AA sequence Show only first row Show all	>Lus10037289 pacid=23152370 polypeptide=Lus10037289 locus=Lus10037289.g ID=Lus10037289.BGIv1.0 annot-version=v1.0 MKKNEQSVDRISQLPDEIIYLILQSLDLHKSAARTSVLSRRWLHLWRSYPVVEFQGYYGRKSFKFQSFAAATSNRLQAVPLLLDSFTVVLQQSKNLGQEF YQLLSSASVGVDNGGRSPLNVVVKNFGSSIMFEGGMLLNCGRTKFLQLEGFDLSRLHKTCLDNLQQLDLQFVVVSQESFPSCLANSPRLKKLSLKYIRGI HNMVISASNFPSLRSLFLDGRLDLQLSSAPHLQSLSFRGRNLSVVTSSSAPNVKKLDFEPLGELRGREISDSISKLPSLKSLLFNSLSIRGNDGTQFEID APNLVILTIKTRGFKINPIVVSMAPSCRCVVASSIRSYMITKSWFLDLRERLTSLATSFRHLVFELDFPYFHKVSDLDLSQVGCESPPLMVQHLHLGTNI LPLGAANLEKQADKTLLLDALLSTFHPKMVSVAQRQHSCHRRSLFSYISNQIEMKNLRKCCNNEKCWRHQFKDAEIRSVTVDDILTIDKSMTSQPSIAMF ISFSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02920			F-box/RNI-like superfamily pro...		Lus10037289 [exp]	0	1
AT1G63670			Protein of unknown function (D...		Lus10035490 [exp]	4.2	0.8007
AT1G68740		PHO1;H1	EXS (ERD1/XPR1/SYG1) family pr...		Lus10019155 [exp]	4.6	0.8101
AT2G18196			Heavy metal transport/detoxifi...		Lus10033250 [exp]	7.3	0.8214
AT1G67720			Leucine-rich repeat protein ki...		Lus10037051 [exp]	11.7	0.8150
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10020750 [exp]	12.4	0.7820
AT2G37050			Leucine-rich repeat protein ki...		Lus10019907 [exp]	15.5	0.7746
AT1G79640			Protein kinase superfamily pro...		Lus10026108 [exp]	17.3	0.7978
AT5G15080			Protein kinase superfamily pro...		Lus10038087 [exp]	18.5	0.8077
AT1G58360		NAT2, AAP1	NEUTRAL AMINO ACID TRANSPORTER...		Lus10033759 [exp]	19.7	0.7522
AT5G36930			Disease resistance protein (TI...		Lus10033953 [exp]	21.6	0.8056

Compare expression of checked genes

Lus10037289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.