Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79600 674 / 0 Protein kinase superfamily protein (.1) AT1G71810 261 / 5e-77 Protein kinase superfamily protein (.1) AT4G31390 255 / 3e-75 Protein kinase superfamily protein (.1.2) AT3G24190 251 / 1e-72 Protein kinase superfamily protein (.1) AT5G24970 242 / 5e-70 Protein kinase superfamily protein (.1.2) AT2G39190 162 / 1e-41 ATATH8 Protein kinase superfamily protein (.1.2) AT3G07700 151 / 3e-38 Protein kinase superfamily protein (.1.2.3) AT5G64940 138 / 1e-33 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT1G65950 86 / 2e-17 Protein kinase superfamily protein (.1) AT5G05200 77 / 2e-14 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035701 [exp] 771 / 0 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1) Lus10017924 [exp] 278 / 2e-83 AT1G71810 858 / 0.0 Protein kinase superfamily protein (.1) Lus10020103 [exp] 244 / 1e-70 AT5G24970 920 / 0.0 Protein kinase superfamily protein (.1.2) Lus10020152 [exp] 232 / 3e-66 AT4G31390 1041 / 0.0 Protein kinase superfamily protein (.1.2) Lus10026952 [exp] 220 / 2e-60 AT4G31390 878 / 0.0 Protein kinase superfamily protein (.1.2) Lus10032616 [exp] 218 / 2e-59 AT3G23940 1162 / 0.0 dehydratase family (.1.2) Lus10043132 [exp] 217 / 2e-59 AT3G23940 1148 / 0.0 dehydratase family (.1.2) Lus10036522 [exp] 162 / 1e-41 AT2G39190 940 / 0.0 Protein kinase superfamily protein (.1.2) Lus10006363 [exp] 157 / 4e-40 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G000100 [exp] 672 / 0 AT1G79600 949 / 0.0 Protein kinase superfamily protein (.1) Potri.002G061000 [exp] 273 / 3e-81 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1) Potri.006G275600 [exp] 259 / 1e-76 AT4G31390 1058 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G050700 [exp] 252 / 6e-73 AT3G24190 1233 / 0.0 Protein kinase superfamily protein (.1) Potri.018G014000 [exp] 243 / 2e-70 AT5G24970 973 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G221000 [exp] 181 / 1e-47 AT2G39190 965 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G168600 [exp] 146 / 2e-36 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G083200 [exp] 144 / 1e-35 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.007G082500 [exp] 142 / 4e-35 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.004G075100 [exp] 86 / 5e-17 AT1G65950 660 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10037291 pacid=23152429 polypeptide=Lus10037291 locus=Lus10037291.g ID=Lus10037291.BGIv1.0 annot-version=v1.0 ATGCAGGAGGGGAAAAACGCTAGGAGGTTTAAGAAGTTGTATGCTGAAAAGGAAGATATACTAGTTCCAGATATATTCTGGGACTATACGAGTGGCAAAG TTTTGACAATGGAGTGGGTTGATGGTGTTAAATTAAGTCAACACGAGGCTATTGAGAGCCAGGGTTTGAAGGTTCTTGATCTTGTGAACACAGGGATACA ATGCAGCCTCAGGCAGCTTCTCGAATATGGATATTTCCATGCAGATCCGCACCCTGGTAATCTGCTGGCAACACCAGAAGGAAAGCTGGCTTTTCTTGAT TTTGGAATGATGAGCGAGACCCCAGAAGAAGCAAGATATGCAATCATTGGCCACGTTGTACACTTAGTTAACAGAGATTATGAAGCTATGGCTCAGGATT ACTACGCTCTCAAATTCTTGTCAAGAGATGTTGATGTCACCCCAATTGTTCCAGCACTACAGAATTTCTTTGATGATGCTCTCAATTACACTGTCAGTGA ACTCAACTTCAAAACACTGGTAGATGGACTGGGAGCTGTTTTCTATCAGTATCCCTTTAATGTCCCCGCATATTATGCATTGATATTAAGATCCCTCACC GTGCTTGAAGGACTGGCCCTTAATGCCGATCCAAATTTCAAGGTGCTGGCTGCTTCATACCCTTACTTTGCAAAAAGGCTTCTCACAGATCCGAATCCAT ATCTCAGAGATGCTCTTATTGAGCTACTTTTCAAAGATGGGAGGTTTAGGTATAACAAATATGTCGATTTCATCACCAGCGATGTTGTTGCTCTTATTGA TGAATTCGCCTGCAGAGTTTATCAGGAGCTCAACTATGTTCAGGAGGGGAAAAACGCTAGGAGGTTTAAGAAGTTGTATGCTGAAAAGGAAGATATACTA GTTCCTGATATATTCTGGGACTATACGAGTGGCAAAGTGTTGACGATGGAATGGGTTGATGGTGTTAAATTAAGTCAACACGAGGCTATTGAGAGCCAGG GTCTGAAAGTTCTTGATCTTGTGAATACAGGGATACAATGCAGCCTCAGGCAGCTCCTTGAATATGGATATTTCCATGCAGATCCTCACCCTGGTAACCT GCTGGCGACACCAGAAGGAAAGCTGGCTTTTCTTGATTTTGGGATGATGAGCGAGACCCCAGAAGAAGCAAGATATGCAATAATTGGCCACGTTGTACAC TTGGTTAACAGAGATTATGAAGCTATGGCTCAGGATTACTACGCTCTCAAATTCTTGTCAAGAGATGTTGATGTCACCCCAATTGTTCCAGCACTACAGA ATTTCTTTGATGATGCTCTCAATTACACTGTCAGTGAACTCAACTTCAAAACACTGGTAGATGGACTGGGAGCTGTTTTCTATCAGTATCCCTTTAATGT CCCCGCATATTATGCATTGATATTAAGATCCCTCACCGTGCTTGAAGGACTGGCCCTTAATGCCGATCCAAATTTCAAGGTGCTGGCTGCTTCATACCCT TACTTTGCAAAAAGGCTTCTCACCGATCCGAATCCATATCTCAGAGATGCTCTTATCGAGCTACTTTTCAAAGATGGGAGGTTTAGGTGGAAGAGACTTG AAAACTTACTTGTTCAGGGAAGTAAAGATAGAGATTTCTCAGCAAAGGATGCGTTACAGCCAGTGTTGAAACTTCTGTTGGGGGAAGATGGGGAAGAGTT GCGAAGCTTGGTGGTCAAGGAAGCTGTATACGTATCAGAAGCTGTAGTTTTGACTTCAGTTGTTGATACCTACAACTCCATACCACCCCCCTTACGGCTT CCAATCCTCAATGGGAATGGAAGAGGGCCTCTTACGATGATGAGCGAAATTGAATTCCAAAGAATTAGAGAGTTCAGGGACAGAGTGTCCAGAGTGTGGG GACTTTTACAAACCTCTGAAGATTTCGATCCAGCCCTCTTGCAGCCTATATTACAGGTGCTTCAACAACCCGAGGCACGCAGTCTGGGTGGACGTGTGAT TGGTGGAGCAACTCAGCGCCTTGCAGCTCGATTGTTGCAACAAGTTCTTCGAACCCCGCCCCCTACTTCTTTTTCTTCTCCGACATCTTAG
AA sequence Show only first row Show all	>Lus10037291 pacid=23152429 polypeptide=Lus10037291 locus=Lus10037291.g ID=Lus10037291.BGIv1.0 annot-version=v1.0 MQEGKNARRFKKLYAEKEDILVPDIFWDYTSGKVLTMEWVDGVKLSQHEAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPEGKLAFLD FGMMSETPEEARYAIIGHVVHLVNRDYEAMAQDYYALKFLSRDVDVTPIVPALQNFFDDALNYTVSELNFKTLVDGLGAVFYQYPFNVPAYYALILRSLT VLEGLALNADPNFKVLAASYPYFAKRLLTDPNPYLRDALIELLFKDGRFRYNKYVDFITSDVVALIDEFACRVYQELNYVQEGKNARRFKKLYAEKEDIL VPDIFWDYTSGKVLTMEWVDGVKLSQHEAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPEGKLAFLDFGMMSETPEEARYAIIGHVVH LVNRDYEAMAQDYYALKFLSRDVDVTPIVPALQNFFDDALNYTVSELNFKTLVDGLGAVFYQYPFNVPAYYALILRSLTVLEGLALNADPNFKVLAASYP YFAKRLLTDPNPYLRDALIELLFKDGRFRWKRLENLLVQGSKDRDFSAKDALQPVLKLLLGEDGEELRSLVVKEAVYVSEAVVLTSVVDTYNSIPPPLRL PILNGNGRGPLTMMSEIEFQRIREFRDRVSRVWGLLQTSEDFDPALLQPILQVLQQPEARSLGGRVIGGATQRLAARLLQQVLRTPPPTSFSSPTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79600			Protein kinase superfamily pro...		Lus10037291 [exp]	0	1
AT2G36895			unknown protein		Lus10001393 [exp]	8.3	0.6994
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10042874 [exp]	12.6	0.7010
AT3G10970			Haloacid dehalogenase-like hyd...		Lus10029053 [exp]	19.0	0.6409
AT1G79600			Protein kinase superfamily pro...		Lus10035701 [exp]	27.6	0.6952
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10040482 [exp]	31.6	0.6686
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10005570 [exp]	42.5	0.6511
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10004812 [exp]	43.4	0.6548
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Lus10021349 [exp]	48.9	0.6487
AT4G16563			Eukaryotic aspartyl protease f...		Lus10008513 [exp]	74.8	0.6033
AT5G13030			unknown protein		Lus10031224 [exp]	75.6	0.6071

Compare expression of checked genes

Lus10037291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.