Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16330 415 / 8e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G38240 251 / 1e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 236 / 2e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 234 / 1e-73 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G24530 223 / 1e-69 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G55970 222 / 4e-69 ATJRG21 jasmonate-regulated gene 21 (.1) AT1G17020 221 / 5e-69 ATSRG1, SRG1 senescence-related gene 1 (.1) AT4G10500 217 / 2e-67 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G08640 216 / 5e-67 ATFLS1, FLS flavonol synthase 1 (.1.2) AT1G78550 215 / 1e-66 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035702 [exp] 490 / 4e-175 AT4G16330 347 / 4e-121 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10005037 [exp] 243 / 4e-77 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10015573 [exp] 236 / 5e-75 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10004808 [exp] 226 / 1e-70 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030185 [exp] 224 / 2e-70 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006518 [exp] 224 / 9e-70 AT3G21420 523 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10004387 [exp] 222 / 5e-69 AT3G11180 509 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10032930 [exp] 221 / 5e-69 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10028068 [exp] 218 / 7e-68 AT5G08640 429 / 1e-151 flavonol synthase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G024100 [exp] 452 / 2e-159 AT4G16330 419 / 7e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.008G069300 [exp] 243 / 2e-77 AT5G05600 528 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G188000 [exp] 239 / 9e-76 AT5G05600 511 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 233 / 2e-73 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 231 / 7e-73 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G023600 [exp] 230 / 2e-72 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 229 / 2e-72 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 230 / 3e-72 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G382400 [exp] 226 / 9e-71 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.001G355100 [exp] 224 / 6e-70 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10037292 pacid=23152299 polypeptide=Lus10037292 locus=Lus10037292.g ID=Lus10037292.BGIv1.0 annot-version=v1.0 ATGCTGGATAGCTGGAGGTGGAAGTTCATCCGCTCCGAAGCTTTTTTCGTCCGAACAGCTTACCACATCCTAAGAGAGCGACTCAATTTCCAAGACTCCA AGAAGGAGGAGGAGGAAGCTGCTGGAAGCATGGAATTGGAAGGGAGCCCAGCCATCAGAGTGCAGAGCATATCCCAAGCAAGAAAATCGGAGGTCCCTCC TCAATACATTCAGCCTCCTATTAACCGACCGAATATCTCCGCCCAATCCGACGGCGGCGGAGACTTCCCCGTGATCGACCTCGGCGGGGATTCCGTTTGC GAAGCAGTTGGTCGAGCTTGTAGGGATTGGGGAGCTTTCCAGGTGATTAACCATGGGGTTCCGATTCAGCTACTTGACGACATGAGGAAGGTCGGTCTCT CCTTCTTCAACGACTCCCCCATGGAGGACAAGCTCATGTATAGCTGCTCGCCGGACTCCGCCGCTTCAGAAGGCTACGGGAGCAAGATGCTGGTGGACAG CGATGACAACCATGGGGTTTTGGATTGGAGAGACTATTTCGATCACCACACGTTGCCTCTCTCTCGCCGGAATCCGTCTAATTGGCCTCATTACCCTCCC AATTACAGAGATGTTGTTTCCCGGTACAGCGATGAAATGAATGAGCTGGCGGAGAAGCTGCTGGGGGTTATCTCGGAGAGTCTTGGGGTGGCATCGTCTT GTATAAAGGATGTAGCTGGGGAATTCTATCAGAATATTACTGTCAGTTATTACCCTCCCTGCCCTCGCCCAGACCTAACTCTGGGTCTTCAGTCCCATTC CGATTTGGGAGCTCTCACCTTATTGATCCAAGACCAAGTTTCTGGCCTTGAGGTTCTCAAGCACTCACATTGGCTCCCTGTCCAGCCTCTTCCCGAAGCC ATTGTTGTTCTTGTTTCAGATCAAACGGAGATCATCACCAACGGAAAGTACAGGAGTGCTGTGCACAGAGCTGTGACCAACTCCAGCATGGCAAGGTTGT CAGTTGCAACATTCCATGATCCAGCCAAGACCAGAAACATATCCCCTGCTCCCGAGATCGTGTCCGAGTCATCATCTCAGAGATACCGAGAAGTGATTTA CGGCGATTACATGTCAACATGGTATACCAAAGGCCCAGAAGGGAAACGGACCATCGATTCCCTCTTGATCGACTCTTAA
AA sequence Show only first row Show all	>Lus10037292 pacid=23152299 polypeptide=Lus10037292 locus=Lus10037292.g ID=Lus10037292.BGIv1.0 annot-version=v1.0 MLDSWRWKFIRSEAFFVRTAYHILRERLNFQDSKKEEEEAAGSMELEGSPAIRVQSISQARKSEVPPQYIQPPINRPNISAQSDGGGDFPVIDLGGDSVC EAVGRACRDWGAFQVINHGVPIQLLDDMRKVGLSFFNDSPMEDKLMYSCSPDSAASEGYGSKMLVDSDDNHGVLDWRDYFDHHTLPLSRRNPSNWPHYPP NYRDVVSRYSDEMNELAEKLLGVISESLGVASSCIKDVAGEFYQNITVSYYPPCPRPDLTLGLQSHSDLGALTLLIQDQVSGLEVLKHSHWLPVQPLPEA IVVLVSDQTEIITNGKYRSAVHRAVTNSSMARLSVATFHDPAKTRNISPAPEIVSESSSQRYREVIYGDYMSTWYTKGPEGKRTIDSLLIDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16330			2-oxoglutarate (2OG) and Fe(II...		Lus10037292 [exp]	0	1
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Lus10007925 [exp]	2.2	0.9346
AT4G25770			alpha/beta-Hydrolases superfam...		Lus10001320 [exp]	5.1	0.9282
AT1G61250		SC3	secretory carrier 3 (.1.2)		Lus10011229 [exp]	7.5	0.9220
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10036486 [exp]	9.3	0.9225
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10014296 [exp]	9.5	0.9098
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10029626 [exp]	9.7	0.9155
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10016919 [exp]	11.3	0.9047
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10019328 [exp]	11.5	0.9126
AT2G17990			unknown protein		Lus10041920 [exp]	12.2	0.9086
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Lus10012593 [exp]	12.8	0.9048

Compare expression of checked genes

Lus10037292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.