Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13000 587 / 0 Protein of unknown function, DUF547 (.1.2) AT1G16750 394 / 6e-131 Protein of unknown function, DUF547 (.1) AT5G42690 157 / 2e-41 Protein of unknown function, DUF547 (.1.2.3) AT5G47380 156 / 2e-40 Protein of unknown function, DUF547 (.1) AT4G37080 148 / 5e-38 Protein of unknown function, DUF547 (.1.2.3) AT5G66600 140 / 2e-35 Protein of unknown function, DUF547 (.1.2.3.4) AT2G39690 133 / 1e-33 Protein of unknown function, DUF547 (.1.2) AT2G23700 131 / 7e-32 Protein of unknown function, DUF547 (.1) AT3G18900 125 / 1e-30 unknown protein AT1G21060 125 / 2e-30 Protein of unknown function, DUF547 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035703 [exp] 797 / 0 AT1G78980 746 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10033328 [exp] 780 / 0 AT3G13000 712 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10034787 [exp] 780 / 0 AT3G13000 710 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10027653 [exp] 402 / 3e-133 AT3G13000 459 / 4e-156 Protein of unknown function, DUF547 (.1.2) Lus10039917 [exp] 395 / 1e-130 AT1G16750 457 / 1e-155 Protein of unknown function, DUF547 (.1) Lus10016786 [exp] 147 / 3e-37 AT5G66600 666 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10022480 [exp] 147 / 3e-37 AT5G66600 662 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10007795 [exp] 147 / 1e-36 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1) Lus10032768 [exp] 132 / 2e-32 AT4G37080 495 / 3e-171 Protein of unknown function, DUF547 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G003900 [exp] 656 / 0 AT3G13000 654 / 0.0 Protein of unknown function, DUF547 (.1.2) Potri.006G216800 [exp] 413 / 2e-137 AT3G13000 437 / 1e-147 Protein of unknown function, DUF547 (.1.2) Potri.001G157200 [exp] 156 / 1e-40 AT5G47380 642 / 0.0 Protein of unknown function, DUF547 (.1) Potri.007G033100 [exp] 151 / 5e-39 AT5G66600 721 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.005G130000 [exp] 149 / 4e-38 AT5G66600 664 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.004G150000 [exp] 144 / 1e-36 AT5G66600 447 / 2e-150 Protein of unknown function, DUF547 (.1.2.3.4) Potri.009G111100 [exp] 144 / 2e-36 AT5G66600 466 / 5e-158 Protein of unknown function, DUF547 (.1.2.3.4) Potri.007G041100 [exp] 141 / 2e-35 AT4G37080 577 / 0.0 Protein of unknown function, DUF547 (.1.2.3) Potri.014G034800 [exp] 135 / 1e-33 AT5G42690 476 / 4e-163 Protein of unknown function, DUF547 (.1.2.3) Potri.002G001900 [exp] 133 / 5e-33 AT1G76620 414 / 1e-139 Protein of unknown function, DUF547 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04784 [flax] [poplar] DUF547 Protein of unknown function, DUF547
Representative CDS sequence Show only first row Show all	>Lus10037293 pacid=23152630 polypeptide=Lus10037293 locus=Lus10037293.g ID=Lus10037293.BGIv1.0 annot-version=v1.0 ATGTGTGATTCTCCCCTCACTGGATCTTACCTAAGCCAAAGCGAAGCGGTATCTAGGACTTCAACTTCTGGTGCGACATGCGGTACCTCAGGAACCCAGT TTGATCTTGTGAATGAATGTTGGCGGAGTGCACATATAGCAGAGGTCCAAAGATTACAGCAGCAGTTGCAAGCAGAGATTGAACTGCACGAGATTCTCGA AGATGCTATTGAGAAACGCACAGTTGAATTATCTTGTTCATCATGCCTCCCACATCAAGCTCAGGAGCTTCTCTCTACTATTGCTACATTAGAGATCACA GTTACAGAACTTGAGCAAAACATTGTCCATTTGCATTTCCAGCTTACTCAAGAGAGAAATGAGCGTCGGCTAGTTGAATACCGCCTTGATCATTCATCAC TGCCTTCAGTGACTGTTTGCTCCTCTGATTATGACAGAAGAATGGTTCCTTCTCTGAGGTGTACAAAGCATTCTGAGTCGAAACTTTATAACTTGGATGG AGATATCTTATGGGAGGACCGAGATACTGGAACCATAACTACAATGGAACCCTCTTGTTCACAAGTCACTGTTGAGGAAGCAATCAGGCTGACAACATCT TTGGACGGCAAGAAAGCAGCTCTAAAGATGAATACTAAACTGGGTCCTTGTCTGAATCCCAAACTTTCGAAGGAAATGACATCGAGTGGCTTATGGGGTC ACCCTAATAAACTTTCTGAGGAGATGGTAAAGTGTATGAAAAACATATTCATATCTCTATCAGATTCTCCCGTGTCCGACAAATCCTCTGCACTAGAGAG CCAATCTTCACCAGTGTCTCTTTCTAATTCATCATGGTGGTCATCATCATCTGAGCGCTCAATATTATCATCATGGGCCCAGAGCCCCAAAGTTGATATC CAGAGTAACGGCGAAGTGTTGTCTTCTGAGAATGGTTCCGATCCTTACAGAGTCCGAGGGAAATTGAGCTGGGCTGACATTGGGAACTACGGCTTAGCAA CTGAAGTGTCATGGATGTCAGTTGGAAAGAAACAATTAGAGTATGCGTCTGGGGCATTAAGAAAGTTCAGTGGATTGAATGCTTTTCTCGATATGGTCCG TCCTTCTGATAACAGAACACTCGTCGAACAACTGGCCAAAGTGAACCCTATTCACTTGAGCTGCGATGAGAAGCTTGCTTTCTGGATCAACTTGTACAAT GCGTTGATCATGCATCAGGCTTACATAGCTTATGGAGTCCCTAGAAGTGACTTAAAGTTGTTCTCTTTGATGCAAAAGGCTGCTTATACTGTTGGGGGCC ATTCTTTCACTGCAGCTGTCATTGAGTACGCGATTTTGAAGATGAAACCTCCACTCCACAGACCACAAATTGCTTTGCTTCTTGCTCTCCACAAACTGAA GCTATCAGAGGAAGAACGGAAATGTGCAGTCAATACACATGAGCCGCTTGTAGCATTTGCCCTCAGTTGTGGAATGTATTCCTCGCCTGCGGTAAGGATT TACACGGCGAAGAACGTAAGAGAAGAGCTTGAAGAAGCTCAGCACGATTTCATAAGAGCTAGTGTTGGGATCAGCAGCAGAGGGAAGCTGTTGGTGCCTA AATTGGTGCACTGCTTTGCTAAGAACTTTGTGGACGATTCCAACTTGGCAGTATGGATATCTCATTACCTGCCCCAGAATCAGGCTGCATTTGTCGAGCA GTGCATTTCGCAGAGGCGGCAAGGGCTCTTGGCTTCCAGGAATTGCGGAATCCTGCCTTTCGATTCTCGATACCGGTATTTGTTCCTTCCTGACAAAGTT CCGATACTGTGA
AA sequence Show only first row Show all	>Lus10037293 pacid=23152630 polypeptide=Lus10037293 locus=Lus10037293.g ID=Lus10037293.BGIv1.0 annot-version=v1.0 MCDSPLTGSYLSQSEAVSRTSTSGATCGTSGTQFDLVNECWRSAHIAEVQRLQQQLQAEIELHEILEDAIEKRTVELSCSSCLPHQAQELLSTIATLEIT VTELEQNIVHLHFQLTQERNERRLVEYRLDHSSLPSVTVCSSDYDRRMVPSLRCTKHSESKLYNLDGDILWEDRDTGTITTMEPSCSQVTVEEAIRLTTS LDGKKAALKMNTKLGPCLNPKLSKEMTSSGLWGHPNKLSEEMVKCMKNIFISLSDSPVSDKSSALESQSSPVSLSNSSWWSSSSERSILSSWAQSPKVDI QSNGEVLSSENGSDPYRVRGKLSWADIGNYGLATEVSWMSVGKKQLEYASGALRKFSGLNAFLDMVRPSDNRTLVEQLAKVNPIHLSCDEKLAFWINLYN ALIMHQAYIAYGVPRSDLKLFSLMQKAAYTVGGHSFTAAVIEYAILKMKPPLHRPQIALLLALHKLKLSEEERKCAVNTHEPLVAFALSCGMYSSPAVRI YTAKNVREELEEAQHDFIRASVGISSRGKLLVPKLVHCFAKNFVDDSNLAVWISHYLPQNQAAFVEQCISQRRQGLLASRNCGILPFDSRYRYLFLPDKV PIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13000			Protein of unknown function, D...		Lus10037293 [exp]	0	1
AT2G02570			nucleic acid binding;RNA bindi...		Lus10024458 [exp]	2.6	0.8736
AT5G14710			unknown protein		Lus10014543 [exp]	4.0	0.8093
AT2G02000		GAD3	glutamate decarboxylase 3 (.1)		Lus10009116 [exp]	12.7	0.8291
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Lus10030600 [exp]	14.1	0.8404
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10036009 [exp]	17.8	0.8124
AT3G18760			Translation elongation factor...		Lus10038301 [exp]	18.4	0.8235
AT1G71490			Tetratricopeptide repeat (TPR)...		Lus10003508 [exp]	19.0	0.7741
					Lus10043057 [exp]	20.7	0.8067
AT5G41800			Transmembrane amino acid trans...		Lus10001908 [exp]	20.8	0.8108
AT4G02210			unknown protein		Lus10042596 [exp]	24.2	0.8083

Compare expression of checked genes

Lus10037293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.