Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78980 466 / 4e-158 SRF5 STRUBBELIG-receptor family 5 (.1) AT3G13065 421 / 1e-140 SRF4 STRUBBELIG-receptor family 4 (.1) AT1G53730 350 / 1e-112 SRF6 STRUBBELIG-receptor family 6 (.1.2) AT3G14350 214 / 1e-61 SRF7 STRUBBELIG-receptor family 7 (.1.2.3) AT4G22130 213 / 4e-61 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT5G06820 184 / 2e-50 SRF2 STRUBBELIG-receptor family 2 (.1) AT1G11130 159 / 1e-41 SRF9, SCM, SUB STRUBBELIG-RECEPTOR FAMILY 9, SCRAMBLED, Leucine-rich repeat protein kinase family protein (.1) AT4G03390 152 / 4e-39 SRF3 STRUBBELIG-receptor family 3 (.1) AT2G20850 139 / 6e-35 SRF1 STRUBBELIG-receptor family 1 (.1) AT4G31250 115 / 7e-27 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035703 [exp] 919 / 0 AT1G78980 746 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10033333 [exp] 677 / 0 AT1G78980 803 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10034790 [exp] 628 / 0 AT1G78980 768 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10020030 [exp] 210 / 5e-60 AT4G22130 947 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10037464 [exp] 187 / 1e-51 AT1G53730 824 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10003926 [exp] 187 / 1e-51 AT1G53730 885 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10015549 [exp] 187 / 9e-51 AT4G22130 972 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10016276 [exp] 178 / 6e-48 AT5G06820 669 / 0.0 STRUBBELIG-receptor family 2 (.1) Lus10012022 [exp] 174 / 6e-47 AT5G06820 659 / 0.0 STRUBBELIG-receptor family 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G001200 [exp] 561 / 0 AT1G78980 817 / 0.0 STRUBBELIG-receptor family 5 (.1) Potri.007G002600 [exp] 540 / 0 AT1G78980 499 / 1e-168 STRUBBELIG-receptor family 5 (.1) Potri.001G161600 [exp] 391 / 2e-128 AT1G53730 590 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.004G005301 [exp] 214 / 2e-61 AT4G22130 906 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.011G010500 [exp] 211 / 3e-60 AT4G22130 916 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.003G073700 [exp] 185 / 7e-51 AT1G53730 575 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.006G190700 [exp] 183 / 3e-50 AT5G06820 696 / 0.0 STRUBBELIG-receptor family 2 (.1) Potri.011G045600 [exp] 157 / 8e-41 AT4G03390 617 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.013G144600 [exp] 154 / 5e-40 AT4G03390 783 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.004G037000 [exp] 154 / 9e-40 AT4G03390 645 / 0.0 STRUBBELIG-receptor family 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10037294 pacid=23152360 polypeptide=Lus10037294 locus=Lus10037294.g ID=Lus10037294.BGIv1.0 annot-version=v1.0 ATGTACCCTACCTTCTTCCTCATCATTTTCATCCTCCCCACCCTCATCTCCAATGTCTATTCCAAGACCGATTCCCAACATGTGGCGGCTTTGAATGTGA TGTACACGAGCTTGAATTCTCCGTCAAAATTGGACGGATGGAGGCCTAGCGGGGGCGACCCTTGCGGGGATTCTTGGGATGGAATTACTTGCTCCGACTC CAAAGTCACAGAAATAAGATTATCAGGGATGGGACTAACAGGGACGCTGGGATACCAACTCTCCAACTTGAACTCAGTCACCCACTTTGACGTGAGCAAG AACAAGCTGCAACAAGAGATACCTTATCAGCTCCCTCCAAATGCAGTCTACATAGATTTATCCAAAAATCAATTTCAAGGCACTCTGCCTTATTCAGTCT CACTGATGACTGACCTTGAACATCTAGATGTGAGTAATAACAAGCTAAATGGGCAGCTCACTGATATGTTTCAGAAACTTTCTAAGCTCCAAGTCATGGA TTTATCAAACAACAAAATGTCAGGAGATCTGCCACAAAGCTTGTCATCACTTAAGAGCTTGAGTCAGCTGTTCTTGCAAAACAACAAATTCACTGGGAAA ATCCTTGTGTTGGGGAACCTTCCATTGGACGAGCTAAACCTTGCAAACAATAAGTTCACCGGGTTCATCCCTGCAAAGCTTGCCGACATCAACAGCTTAA ATACTGATGGGAACAATTGGTCAAAAGGGCCAGCACCACCAGGCCAAAAGACTGCATCAAATGCAAACACTGGTGGTGGAGGAGCAAAGGTGTCAACAGG AATCATGATAGCACTTATAGTATTAGGAGTGGTTATCTTGATCGTCCTTCTCATCATCCTCTTCTTCTCAAGAAAACGAGCCTCTACTCCTTCGTCGTTC CTGGACGACGAGGAAAAGAGTCATCACCACCACCGGAACGGGTTCACCCCTCTCACTTCACAAGAACTCTCTTACAACAACAACCACCACCCCCATTTCC GCCCCCCGAGAGACTCCTTCGAGTCCACAAACTCGATCGACATCAAGACCCTCCAGAAGGCGCCTTCCCAGGGTTACAAGCCGCCTCCTTACGACTTTGC GCAGTCTTTAAACGACAACGAATTCGCCAGCCGCTTGAACTCCAAGAGAGGTGCAGCCGGCGGTGCCAGGGCTCCTGTTCCTTACGCCTTGTCGGAATTG CAGGGCGCTACCTCTAGTTTCGCCCCTGGTCGCCTTCTCGGAGAAGGCACGTTGGGCCGTGTCTACAGGGCCAAATACTCCGACGGGAAGGTGCTGGCTG TAAAGAAGATTGATTCTTCCTACTTCAAAGAAGGGAAAATTGAGGATTTCTCGGACATTGTGGCTAGCATTTCGAAAATTCACCATCCGAACGTTGCGGA GCTTGTTGGGTATTGTTCGGAACAAGGGCATAACATGTTGATTTATGAGTACTACAGGAATGGCTCACTTCATGACTTCCTGCACAATTCCGGTGACTTC AGCAACCCCTTGACTTGGAACACCCGAGTCCGCATTGCTCTAGGGACCGCACGAGCTGTTGAGTAA
AA sequence Show only first row Show all	>Lus10037294 pacid=23152360 polypeptide=Lus10037294 locus=Lus10037294.g ID=Lus10037294.BGIv1.0 annot-version=v1.0 MYPTFFLIIFILPTLISNVYSKTDSQHVAALNVMYTSLNSPSKLDGWRPSGGDPCGDSWDGITCSDSKVTEIRLSGMGLTGTLGYQLSNLNSVTHFDVSK NKLQQEIPYQLPPNAVYIDLSKNQFQGTLPYSVSLMTDLEHLDVSNNKLNGQLTDMFQKLSKLQVMDLSNNKMSGDLPQSLSSLKSLSQLFLQNNKFTGK ILVLGNLPLDELNLANNKFTGFIPAKLADINSLNTDGNNWSKGPAPPGQKTASNANTGGGGAKVSTGIMIALIVLGVVILIVLLIILFFSRKRASTPSSF LDDEEKSHHHHRNGFTPLTSQELSYNNNHHPHFRPPRDSFESTNSIDIKTLQKAPSQGYKPPPYDFAQSLNDNEFASRLNSKRGAAGGARAPVPYALSEL QGATSSFAPGRLLGEGTLGRVYRAKYSDGKVLAVKKIDSSYFKEGKIEDFSDIVASISKIHHPNVAELVGYCSEQGHNMLIYEYYRNGSLHDFLHNSGDF SNPLTWNTRVRIALGTARAVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10037294 [exp]	0	1
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10017124 [exp]	1.0	0.9743
AT5G47700			60S acidic ribosomal protein f...		Lus10033403 [exp]	1.7	0.9515
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10023625 [exp]	2.0	0.9564
AT2G24210		AtTPS10	terpene synthase 10 (.1)		Lus10006355 [exp]	3.5	0.9510
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10039705 [exp]	3.9	0.9033
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10002527 [exp]	4.5	0.8733
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10010942 [exp]	5.5	0.8963
					Lus10039498 [exp]	6.2	0.8616
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10028475 [exp]	6.3	0.8786
AT4G11780			unknown protein		Lus10024488 [exp]	9.5	0.8559

Compare expression of checked genes

Lus10037294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.