Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13050 335 / 2e-110 AtNiaP nicotinate transporter, Major facilitator superfamily protein (.1) AT3G20660 75 / 3e-14 4-Oct, ATOCT4 organic cation/carnitine transporter4 (.1) AT1G73220 58 / 6e-09 1-Oct, ATOCT1 organic cation/carnitine transporter1 (.1) AT2G16120 57 / 2e-08 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT3G19940 56 / 3e-08 Major facilitator superfamily protein (.1) AT2G16130 55 / 6e-08 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT1G50310 54 / 9e-08 ATSTP9 sugar transporter 9 (.1) AT5G23270 54 / 1e-07 ATSTP11, STP11 sugar transporter 11 (.1) AT1G30220 53 / 3e-07 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT3G18830 53 / 3e-07 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035704 [exp] 639 / 0 AT3G13050 378 / 1e-127 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10033336 [exp] 529 / 0 AT3G13050 485 / 2e-168 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10033337 [exp] 458 / 7e-159 AT3G13050 508 / 2e-177 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10043061 [exp] 424 / 8e-140 AT3G13050 522 / 1e-176 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10027577 [exp] 305 / 1e-98 AT3G13050 504 / 1e-175 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10008555 [exp] 295 / 5e-95 AT3G13050 499 / 7e-174 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10027576 [exp] 236 / 4e-74 AT3G13050 293 / 6e-96 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10018992 [exp] 173 / 1e-48 AT3G13050 464 / 2e-160 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10014801 [exp] 81 / 6e-16 AT3G20660 704 / 0.0 organic cation/carnitine transporter4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G003100 [exp] 409 / 3e-139 AT3G13050 555 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.014G000800 [exp] 393 / 3e-132 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.007G003000 [exp] 387 / 4e-131 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.018G150700 [exp] 325 / 2e-106 AT3G13050 482 / 3e-167 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.018G151700 [exp] 255 / 9e-78 AT3G13050 294 / 2e-91 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.011G130533 [exp] 85 / 2e-17 AT3G20660 708 / 0.0 organic cation/carnitine transporter4 (.1) Potri.009G113600 [exp] 56 / 2e-08 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G027900 [exp] 56 / 3e-08 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.004G152300 [exp] 54 / 2e-07 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.010G174400 [exp] 54 / 2e-07 AT1G16390 627 / 0.0 organic cation/carnitine transporter 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10037295 pacid=23152449 polypeptide=Lus10037295 locus=Lus10037295.g ID=Lus10037295.BGIv1.0 annot-version=v1.0 ATGAGCAAGACAAACTTGGAAGAAGGTCTGTTTCATTTGTTCATGGAATCTCACTCCTTACCGCTCCTATTATTTTTAGCACTTGGAGTGAAACGTTGGT TTGTAAAACTGATTTACGTACTGTGTGGTGCTTGCAGGAGGGGGTTTTTGTTTACAGCAATAGTGACTTCGGTAGCAGGGCTGTTCAGTGCATTTGCTTG GAACTATACGGTGTTGTGTGCATCTCGTGCGATTGTTGGTGTTGGGCTGGGAGGAGTGCCAGTAGTGTTTACATGGTTCTTGGAGTTCATACCAGCACCA ACCAGAGGAAAGTGGATGGTTGGTTTCAACTTTTTCTGGACTCTTGGTGCTATTCTTGAAGTTGGTTTGGCATGGATTGTGATGCCGAGATTAGGATGGA AATGGCTAGTTGGTCTGTCAGCTATTCCATCCTTTCTTCTGCTAGTGTTCTATTACTGGACGCCCGAGTCTCCAAGGTACCTATGCCTAAAGGGTAGAAA AGATGAAGCATTCAGAATCATGGAGAAAGTATCCAGATGCAACAAAAAAAGCTTACCTCCTGGTGTCCTTCTTACCGACCGTGAAATCGAGCAGCAATCA GCTTCTGGTTCCGATTCCTCCGGGTGGGACGATTCCGACTTGGGACTCCTGACCACGCTCCGTCTTCTCCTCTCTCGAAAGCTAGCTCGATCCACCGTCC TGCTATGGCTAATATTCTTTGGGAACGCATTCTCCTACTATGGCCTGGTCCTGCTTACCACTCAGCTGAACCGCAAAGACTTGTGCAGCAAGACTCCAAC GAAATCAACAGACTCTGGTGCTGGGATTGATTACAAGAATGTTTTCATTACTACTCTAGCAGAGTGTCCAGGTGCCCTATTGGCAATTCTGTTAGTGGAT AAAATTGGTCGCAAGTATTCCATGGCATCCATGCTGTTTCTCTGCTGCGCCTTTGTATTGCCGCTGGTAGTGCATCAAACTCCTGTTGTTACTACAATCC TGCTGTTCGGAGCTCGTATCTGCATCACTGGATCGTTTGCTATTGCCTTTGTACTGGCTCCAGAGCTGTACCCAACGTCAGTAAGGTCGACTGGATTTGG AATAGCAAGTTCAATGGGGAGGATTGGAGGGATAACGGCGCCTTTCGTGGCAGTAAGCTTGACTGAAAGATGTCGTCAGAGCGAAGCAGTGCTGCTGTTC ATCGGTATAGCTGCTGTAGCATTGCTAGCTGCACTGTTCATACCGCATGAAACCAAGGGGATTGAGCTGACAGAGAGCATATCCAGCATGAAGAACGAAA CCCGGAAGAACGACCTCAAGCGCCACTTAGATGCCTGA
AA sequence Show only first row Show all	>Lus10037295 pacid=23152449 polypeptide=Lus10037295 locus=Lus10037295.g ID=Lus10037295.BGIv1.0 annot-version=v1.0 MSKTNLEEGLFHLFMESHSLPLLLFLALGVKRWFVKLIYVLCGACRRGFLFTAIVTSVAGLFSAFAWNYTVLCASRAIVGVGLGGVPVVFTWFLEFIPAP TRGKWMVGFNFFWTLGAILEVGLAWIVMPRLGWKWLVGLSAIPSFLLLVFYYWTPESPRYLCLKGRKDEAFRIMEKVSRCNKKSLPPGVLLTDREIEQQS ASGSDSSGWDDSDLGLLTTLRLLLSRKLARSTVLLWLIFFGNAFSYYGLVLLTTQLNRKDLCSKTPTKSTDSGAGIDYKNVFITTLAECPGALLAILLVD KIGRKYSMASMLFLCCAFVLPLVVHQTPVVTTILLFGARICITGSFAIAFVLAPELYPTSVRSTGFGIASSMGRIGGITAPFVAVSLTERCRQSEAVLLF IGIAAVALLAALFIPHETKGIELTESISSMKNETRKNDLKRHLDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10037295 [exp]	0	1
					Lus10033739 [exp]	4.0	0.8577
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10012912 [exp]	10.5	0.7944
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10035433 [exp]	10.6	0.8028
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10015285 [exp]	11.2	0.7818
AT1G67710	GARP	ARR11	response regulator 11 (.1)		Lus10006446 [exp]	14.1	0.8613
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10038639 [exp]	15.4	0.7858
AT2G24700	B3	REM10	Transcriptional factor B3 fami...		Lus10026264 [exp]	16.5	0.8381
AT2G33580			Protein kinase superfamily pro...		Lus10019662 [exp]	23.6	0.8360
AT3G02570		PMI1, MEE31	PHOSPHOMANNOSE ISOMERASE 1, MA...		Lus10017603 [exp]	24.5	0.7449
AT1G26870	NAC	FEZ, ANAC009	FEZ, Arabidopsis NAC domain co...		Lus10015367 [exp]	35.8	0.8222

Compare expression of checked genes

Lus10037295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.