Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20190 399 / 1e-134 Leucine-rich repeat protein kinase family protein (.1) AT1G50610 384 / 4e-129 Leucine-rich repeat protein kinase family protein (.1) AT4G31250 330 / 5e-108 Leucine-rich repeat protein kinase family protein (.1) AT2G07040 304 / 2e-98 ATPRK2A Leucine-rich repeat protein kinase family protein (.1) AT5G35390 303 / 1e-97 Leucine-rich repeat protein kinase family protein (.1) AT5G20690 229 / 8e-70 Leucine-rich repeat protein kinase family protein (.1) AT3G42880 229 / 9e-70 Leucine-rich repeat protein kinase family protein (.1) AT5G16590 193 / 2e-56 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT2G36570 189 / 2e-54 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 187 / 4e-54 RLK902 receptor-like kinase 902 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035710 [exp] 599 / 0 AT3G20190 509 / 3e-175 Leucine-rich repeat protein kinase family protein (.1) Lus10033339 [exp] 412 / 3e-140 AT3G20190 600 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034795 [exp] 360 / 3e-122 AT3G20190 445 / 1e-150 Leucine-rich repeat protein kinase family protein (.1) Lus10020183 [exp] 344 / 1e-113 AT4G31250 599 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10026988 [exp] 343 / 3e-113 AT4G31250 606 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10027597 [exp] 315 / 6e-102 AT5G35390 603 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022946 [exp] 308 / 4e-99 AT5G35390 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017144 [exp] 287 / 6e-91 AT5G35390 597 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038128 [exp] 231 / 4e-73 AT5G20690 462 / 2e-159 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G002000 [exp] 423 / 1e-144 AT3G20190 437 / 4e-145 Leucine-rich repeat protein kinase family protein (.1) Potri.004G170274 [exp] 393 / 2e-136 AT3G20190 408 / 1e-137 Leucine-rich repeat protein kinase family protein (.1) Potri.014G002700 [exp] 400 / 8e-136 AT3G20190 415 / 1e-136 Leucine-rich repeat protein kinase family protein (.1) Potri.018G002600 [exp] 367 / 7e-123 AT3G20190 540 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G279300 [exp] 351 / 1e-116 AT4G31250 570 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G078600 [exp] 323 / 5e-105 AT5G35390 660 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G147300 [exp] 322 / 6e-105 AT5G35390 629 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G139700 [exp] 246 / 3e-76 AT3G42880 611 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G068800 [exp] 212 / 3e-63 AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1) Potri.001G166300 [exp] 210 / 8e-62 AT3G42880 513 / 6e-174 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10037297 pacid=23152265 polypeptide=Lus10037297 locus=Lus10037297.g ID=Lus10037297.BGIv1.0 annot-version=v1.0 ATGGGGTCAGCCTCCGTCACCAAGATCAATACCACAGGCACGGTGCACCCGATGGATAGGGAGGCACCGGACGGAGGCGGAGGAGTGGGGTCGGTCCACG GGGTGAAGAGGGTGGACCAGAACAACAGACTGCTGTTCTTGAGAAATGGGTTGGAGAGGTTTGACTTGCAGGACTTGCTGAGGGCGTCGGCGGAGGTGTT GGGGAGCGGGACGTTCGGGGCGTCGTACAAGGCCGGAGTGAACGGACAGGCGATGGTGGTGAAGAGGTATAGACATATGAATAATGTCGGGAGAGAGGAG TTTCATGAGCATATGAGGAGGCTTGGTCGGTTGGAACATCCCAACTTGTTGCCCCTTGAGGCTTACTATTATAGGAAGGAGGAGAAGCTTTTGGTCTCCA GGTTTGTCGATAATGGCTGCGTGGCTAGCCATCTTCATGGTAACCATTCTTCGGAACAAGGGCTGAACTGGCCAGCTCGGATAAAAATCATACGAGGAAT AGCAAAAGGGTTGGCGTATCTATACGAGGAGCTCCCCTTAACAGTGCCACACGGCCACATAAAATCCTCAAACGTCTTGCTAGACGAGTCGTTCGAGCCG ATGCTAACGGACTACGCACTGCGGCCCGTGGTAAACTCGGACCACGCGCACAAGCTCATGATAGCGTACAAGTCCCCCGAGTACGCCCAGCATGGCCACA CGTCGAACAAGACCGACGTGTGGAGCTTGGGGATATTGATACTCGAGATACTCACGGGGAGGTTCCCGGAGAACTACTTGACCCAGGGCTACGACAGCGG GTCGGACCTGGGGACGTGGGTGAACAACATGGTTAAGGAAAAAAGAACGAGCGAGGTTTTCGAACAGGACATGGGCGGGACCACCAAGGACAGTAAAGGA CAGATGATTCACCTTCTGAAGCTGGCTTTGAGTTGTTGCGAGGAGGAGTTGGAGAGGAGGATTGAGATTAAGGAAGTTGTCGAGCAGATTGATCAGTATC TGGATTTGGATAACGACCATGATTAG
AA sequence Show only first row Show all	>Lus10037297 pacid=23152265 polypeptide=Lus10037297 locus=Lus10037297.g ID=Lus10037297.BGIv1.0 annot-version=v1.0 MGSASVTKINTTGTVHPMDREAPDGGGGVGSVHGVKRVDQNNRLLFLRNGLERFDLQDLLRASAEVLGSGTFGASYKAGVNGQAMVVKRYRHMNNVGREE FHEHMRRLGRLEHPNLLPLEAYYYRKEEKLLVSRFVDNGCVASHLHGNHSSEQGLNWPARIKIIRGIAKGLAYLYEELPLTVPHGHIKSSNVLLDESFEP MLTDYALRPVVNSDHAHKLMIAYKSPEYAQHGHTSNKTDVWSLGILILEILTGRFPENYLTQGYDSGSDLGTWVNNMVKEKRTSEVFEQDMGGTTKDSKG QMIHLLKLALSCCEEELERRIEIKEVVEQIDQYLDLDNDHD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20190			Leucine-rich repeat protein ki...		Lus10037297 [exp]	0	1

Compare expression of checked genes

Lus10037297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.