Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16760 762 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G24370 743 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G78940 741 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT3G20200 728 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G31230 721 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G35380 622 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G26150 553 / 0 protein kinase family protein (.1) AT2G07020 545 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G12000 542 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G17540 469 / 1e-154 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035712 [exp] 921 / 0 AT1G16760 624 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10033340 [exp] 749 / 0 AT1G16760 800 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026989 [exp] 741 / 0 AT2G24370 1014 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024212 [exp] 678 / 0 AT2G24370 780 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10020185 [exp] 614 / 0 AT2G24370 741 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10021596 [exp] 608 / 0 AT2G24370 828 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040573 [exp] 600 / 0 AT2G24370 815 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10027593 [exp] 582 / 0 AT2G24370 665 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008542 [exp] 576 / 0 AT2G24370 823 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G001900 [exp] 837 / 0 AT1G78940 757 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.014G001700 [exp] 804 / 0 AT1G78940 783 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G170742 [exp] 783 / 0 AT1G78940 786 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.006G078500 [exp] 711 / 0 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G002400 [exp] 700 / 0 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G170901 [exp] 582 / 0 AT1G78940 584 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.018G061600 [exp] 570 / 0 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G225300 [exp] 562 / 0 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G198300 [exp] 545 / 0 AT5G12000 639 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G147000 [exp] 375 / 1e-118 AT5G57035 674 / 0.0 U-box domain-containing protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10037298 pacid=23152530 polypeptide=Lus10037298 locus=Lus10037298.g ID=Lus10037298.BGIv1.0 annot-version=v1.0 ATGTGGCTTGCAAAGGGGAATTCAACAAAGAGAGGAGGCAATGGAGGAGGAGGAGGAGGAGGAGGAGGAGTTGCAGGAAATGGATTGGTAGCAGTGGCTA TTGACAAAGATAAAGGAAGCCAGACTGCCTTGAGATGTGCTCTCGAGAATCTTCACAACAAAGGTCATCCCCTCATTCTAATTCACGTTGTTCATAAATC CTCTGGAGGATTGAATTCCGAGCCTTCTCAAGCTGGAAACTCGCATCTTGAGGGCATTACCAAAAGCTTGTTCCTCACGTTTCATTGCTACTGCACCCGT AAAGATGTGCAATGCTTCGATGTAATACTGGAAGACAACGACATCGCGAAAGCAATAGCGGAATACGTCAACTATGCAGCAATCGAGGTGTTGGTTTTGG GCGCTCCGACTCGGCATACATTTATGAAGAAATTCAAGACCGATATACCGACGGCGGTAGCGAAAGGGGTTCCTGATTTTTGCAGGGTTTACGTCGTCTC GAAAGGGAAGCCGACGTTGGTGAAACAGGCGTCTCGTCCGGCGCCGTTCGTGTCTCCTCTGTTGGACCAAATACAGAACCAGATTAATTTTAATGATCAT GAAGAGGATGATACTGCTTCTCAATTGTCTTCGAGAAGCAGAAGCATTCGGTCGGATTGGAGTGCCTCTGCCGCCAAACCTCGTGTCTCGGTCGATGATT CCTTCAGGTCTCCGTTTGGTAGAGGAGGAGGAGGAGGAGGACCAATGAATGCACGATCATTCCAAGAAATGTTGGAAACAGAGAGCGACATATCGTTTAT AAGCTCAGGGAGGCCGAGTACCGAGAGATCTCCAAATACAATGGCAGCAATGGATCCTTTTGGATTTGATTCCTTCATCTCCAACAACAACAATAACAAC AACAACAACAACAACCCTAGAATATCAACTAGCTCCGACACTAGCTATGGTTCGTCGTCAATCATCCCTTCCAACAACAAGTTCGTTGACCTCTCTTCCA TGCAAGAGTTCTCCTTTATCTCCCAGGACAGCGCTAGAACCTCTGTTTCTTCTCAGCATAACATGGACGAGATGGAAACTGAGATGAGACGACTAAAGTT GGAGTTGAAGAATACCATGGAAATGTATAGCACCGCATGCAAAGAAGCCATTGCAGCTAAGCAAAAGGCCTTGGAGATGCAACGATGGAGAACCGAAGAA GAGCAAAAGCTAGAAGAAGCGAAGAATTCCGAAGAAGCCGCACTGTCGAGTATAGAGGAAGAGCGAGCTCGATGCAAAACAGCAGTGGAATCTGCGGAAG CAGCTCAAAAGGTAGCAGAGATGGAGGCTCAAAGGAGGATTTCACTGGAACAGAAGACGCTCAAGGAGGCCGGTGAGCTTAAGAAAGCGATCAACTCCAT TGGCGGCCAGAATGATGTCAGATACCGCAGATATGCAATCGAGGACATCGAAAAGGCCACCAACAAATTTGAAGAGTCCAAAAAAATTGGAGAAGGCGGT TATGGACCAGTTTTCAAGTGTTATCTGGATCACACTCCTGTAGCCGTCAAGGTTCTGCGTCCGGATGCTGTCCAAGGGAGGGAACAGTTCCAAAGAGAGG TAGAAGTACTGAGTATGATAAGACATCCAAACATGGTGCTCCTACTAGGAGCATGTCCCGAATACGGAATCCTAGTCTACGAGCACATGGCCAGAGGAAG CTTAGAAGACTGCCTGTTCCGAAAAGGCAACACTCCCCCTTTGTCATGGCAGCTCCGGTTCAAGATAGCAGCCGAGATCGCAACGGGACTCCTCTTCCTC CACCAGACGAAACCAGAACCACTTGTACACCGCGACCTTAAGCCGGCCAACATACTCCTCGACATCAACTTCGTCAGCAAAATCAGCGATGTCGGCCTAG CGAGGCTGGTCCCGGCTGTAGCGGAGAACGTGACGCAATACCACATGACATCAGCTGCTGGCACTTTCTGCTACATCGACCCGGAGTACCAACAGACCGG AATGTTGGGGGTAAAATCGGACGTGTACTCGTTTGGGATCATACTACTACAGTTGATAACTGCACGGCCGCCTATGGGGTTGTCCCATCTAGTCGAGAAG GCTCTAGAGAATGATTCGTTGGGGGATATATTGGACAAGGATGTTGTTGACTGGCCGATGGAGGATACATTGATTTTCGCCAAGCACGCGCTTCAATGCG CTGAGTTAAGGCGAAAGGACCGGCCGGATTTGGGGTCGGTGGTGTTGCCCGTGCTTCAAAGGTTGAGAGAGATTGCGGAGGAAAATATGGGTTACATGTT CTTCATGGGTCATAACCCTTCCTCAACTCAGACCTCTGTTTCCAATTCTCGGACACAAAGTAAGATTGCTCGAAAAGGGTACATATGGACCGTTTGTGCT GATGAAGAAGAAAAGTGA
AA sequence Show only first row Show all	>Lus10037298 pacid=23152530 polypeptide=Lus10037298 locus=Lus10037298.g ID=Lus10037298.BGIv1.0 annot-version=v1.0 MWLAKGNSTKRGGNGGGGGGGGGVAGNGLVAVAIDKDKGSQTALRCALENLHNKGHPLILIHVVHKSSGGLNSEPSQAGNSHLEGITKSLFLTFHCYCTR KDVQCFDVILEDNDIAKAIAEYVNYAAIEVLVLGAPTRHTFMKKFKTDIPTAVAKGVPDFCRVYVVSKGKPTLVKQASRPAPFVSPLLDQIQNQINFNDH EEDDTASQLSSRSRSIRSDWSASAAKPRVSVDDSFRSPFGRGGGGGGPMNARSFQEMLETESDISFISSGRPSTERSPNTMAAMDPFGFDSFISNNNNNN NNNNNPRISTSSDTSYGSSSIIPSNNKFVDLSSMQEFSFISQDSARTSVSSQHNMDEMETEMRRLKLELKNTMEMYSTACKEAIAAKQKALEMQRWRTEE EQKLEEAKNSEEAALSSIEEERARCKTAVESAEAAQKVAEMEAQRRISLEQKTLKEAGELKKAINSIGGQNDVRYRRYAIEDIEKATNKFEESKKIGEGG YGPVFKCYLDHTPVAVKVLRPDAVQGREQFQREVEVLSMIRHPNMVLLLGACPEYGILVYEHMARGSLEDCLFRKGNTPPLSWQLRFKIAAEIATGLLFL HQTKPEPLVHRDLKPANILLDINFVSKISDVGLARLVPAVAENVTQYHMTSAAGTFCYIDPEYQQTGMLGVKSDVYSFGIILLQLITARPPMGLSHLVEK ALENDSLGDILDKDVVDWPMEDTLIFAKHALQCAELRRKDRPDLGSVVLPVLQRLREIAEENMGYMFFMGHNPSSTQTSVSNSRTQSKIARKGYIWTVCA DEEEK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16760			Protein kinase protein with ad...		Lus10037298 [exp]	0	1

Compare expression of checked genes

Lus10037298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.