Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60900 617 / 0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) AT4G36690 613 / 0 ATU2AF65A U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4) AT1G60830 172 / 8e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G33435 67 / 1e-11 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G71800 64 / 9e-11 CSTF64 cleavage stimulating factor 64 (.1) AT5G09880 64 / 1e-10 Splicing factor, CC1-like (.1) AT5G50250 61 / 4e-10 CP31B chloroplast RNA-binding protein 31B (.1) AT4G24770 58 / 4e-09 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT5G51300 57 / 2e-08 splicing factor-related (.1.2.3) AT3G13224 56 / 3e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035713 [exp] 743 / 0 AT1G60900 640 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Lus10024026 [exp] 610 / 0 AT4G36690 678 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4) Lus10041725 [exp] 609 / 0 AT4G36690 672 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4) Lus10011791 [exp] 122 / 1e-29 AT2G33435 215 / 6e-63 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10023746 [exp] 117 / 7e-28 AT2G33435 209 / 2e-60 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10011201 [exp] 82 / 7e-19 AT1G60830 71 / 3e-17 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10017923 [exp] 66 / 2e-11 AT1G71800 306 / 4e-98 cleavage stimulating factor 64 (.1) Lus10014814 [exp] 65 / 6e-11 AT1G71800 350 / 2e-116 cleavage stimulating factor 64 (.1) Lus10028714 [exp] 63 / 2e-10 AT1G71800 308 / 1e-100 cleavage stimulating factor 64 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G125500 [exp] 649 / 0 AT4G36690 626 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4) Potri.007G028500 [exp] 649 / 0 AT4G36690 601 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4) Potri.011G050400 [exp] 507 / 1e-177 AT1G60900 532 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Potri.004G040900 [exp] 507 / 2e-177 AT1G60900 541 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Potri.010G068400 [exp] 104 / 9e-24 AT2G33435 237 / 3e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G028300 [exp] 65 / 2e-11 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G061200 [exp] 64 / 1e-10 AT1G71800 354 / 3e-117 cleavage stimulating factor 64 (.1) Potri.001G340800 [exp] 62 / 1e-10 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.009G044900 [exp] 59 / 3e-09 AT3G47120 276 / 8e-91 RNA recognition motif (RRM)-containing protein (.1) Potri.007G009800 [exp] 59 / 4e-09 AT5G09880 519 / 9e-180 Splicing factor, CC1-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10037299 pacid=23152406 polypeptide=Lus10037299 locus=Lus10037299.g ID=Lus10037299.BGIv1.0 annot-version=v1.0 ATGACGGAATACGAAGGAGGGACGTACGCCGACGATTTCGACAACAATATCAACAGCAACGGTGGAGAAGGAGACTACGCCGCAGCTGATGCCAACACTG GTGCCGCTGCTTCCCCTCAGGTACTCGCAATTATTTGCAGCTTCGCGTTCTGTCGCCAGATTGCAGGCGCCACTCCTGCCCTTGCTGGAATGTTTCCTAA TATGTTCCCACAAATGACTGGTCAGCCATTTAATACACTCCCCATCATGCCAGCTCAGGCGATGACACAGCAGGCAACCCGGCATGCACGGCGTGTCTAT GTTGGTGGGCTTCCTCCAACAGCCAACGAACAGTCTGTTGCAACTTATTTCAACCAAGTCATGGCAGCAATTGGAGGTAACACTGCTGGTCCAGGTATGG GTGATGCTGTTGTTAATGTCTATATAAACCATGATAAGAAGTTTGCATTTGTGGAGATGAGATCCGTGGAGGAGGCGAGTAATGCAATGGCCTTGGATGG TATTATATTTGAGGGAGCTCCGGTGAAGGTGAGGAGGCCGACTGACTATAATCCATCTCTAGCAGCAACACTTGGCCCTAGCCAACCAAATCCCAACCTC AACTTAGGTGCAGTAGGTCTGACCCCCGGTTCTGCTGGTGGACTTGAGGGTCCAGACCGTATATTTGTGGGTGGACTTCCTTATTACTTTACGGAGGCAC AAGTCAGGGAGTTGCTGGAGTCGTTTGGGCCACTTAGAGGGTTTGATTTGGTAAAAGATAGAGAAACCGGGAACTCGAAAGGCTATGCATTCTGTGTTTA CCAAGATGTGACGGTGACGGACATTGCTTGTGCTGCTCTGAATGGAATTAAGATGGGCGACAAGACGCTAACTGTTAGGCGCGCCAACCAGGGCACGAAT CAGCCTAAACCGGAACAAGAGAACGTACTATTGCATGCCAAACAGCAAATTGCTTTGCAGGGTGCCTTGTTGGGCCAGCCATCCATAATGCAGAGACTTA TGCTGCAACCAGCACCGACAAAAGTTGTATGCTTAACGCAAGTAGTCACTGAGGATGAACTAAGAGATGATCAAGAGTATGAAGACATCTTGGAAGACAT GAGAATAGAAGGCGGGAAATTCGGAAATTTGCTGAATGTGGTTATCCCTCGACCAAATCCTGAAGGTGGGCCTTCACCTGGAGTAGGCAAGGTGTTCTTG GAGTATGGAGATAATGATGGTGCTGCAAAAGCTAGAGCCGGAATGAATGGGAGGAAATTCGGTGGGAACGAAGTGGTGGCTGTGTTCTATGATGAAAGCA GGTTCCATCAAGGGGATTATGAAGGTTGA
AA sequence Show only first row Show all	>Lus10037299 pacid=23152406 polypeptide=Lus10037299 locus=Lus10037299.g ID=Lus10037299.BGIv1.0 annot-version=v1.0 MTEYEGGTYADDFDNNINSNGGEGDYAAADANTGAAASPQVLAIICSFAFCRQIAGATPALAGMFPNMFPQMTGQPFNTLPIMPAQAMTQQATRHARRVY VGGLPPTANEQSVATYFNQVMAAIGGNTAGPGMGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNL NLGAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDVTVTDIACAALNGIKMGDKTLTVRRANQGTN QPKPEQENVLLHAKQQIALQGALLGQPSIMQRLMLQPAPTKVVCLTQVVTEDELRDDQEYEDILEDMRIEGGKFGNLLNVVIPRPNPEGGPSPGVGKVFL EYGDNDGAAKARAGMNGRKFGGNEVVAVFYDESRFHQGDYEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60900			U2 snRNP auxilliary factor, la...		Lus10037299 [exp]	0	1
AT1G60900			U2 snRNP auxilliary factor, la...		Lus10035713 [exp]	1.4	0.8965
AT1G20920			P-loop containing nucleoside t...		Lus10035328 [exp]	1.7	0.9034
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10029625 [exp]	3.5	0.8653
AT1G60200			splicing factor PWI domain-con...		Lus10029161 [exp]	5.0	0.8797
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Lus10015564 [exp]	6.6	0.8834
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10006305 [exp]	7.1	0.8888
AT3G19670		ATPRP40B	pre-mRNA-processing protein 40...		Lus10006142 [exp]	7.2	0.8442
AT1G20920			P-loop containing nucleoside t...		Lus10035327 [exp]	9.5	0.8640
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10007723 [exp]	9.9	0.8573
AT2G16940			Splicing factor, CC1-like (.1....		Lus10027830 [exp]	10.2	0.8145

Compare expression of checked genes

Lus10037299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.