Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16770 353 / 4e-122 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035713 [exp] 468 / 4e-159 AT1G60900 640 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G003300 [exp] 235 / 7e-76 AT1G16770 261 / 4e-86 unknown protein Potri.004G169900 [exp] 207 / 2e-65 AT1G16770 238 / 2e-77 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037300 pacid=23152595 polypeptide=Lus10037300 locus=Lus10037300.g ID=Lus10037300.BGIv1.0 annot-version=v1.0 ATGGGACAAGGTGGGGAGAAGAAGACCTCAACAAGCGACGCCCAAGCTGTCGAGATTCTGGAAAGAGGAGAGATATACTTCTTCTACAGGCCGAGAGTGA ACAGAGAAGAAGCTCACAGCCCTGACGACGTCCAACGCCTCTACATTGTCCTCAGGCCCGAATCCGGCGTCCAAGACAAACAGGAACCAGACTCCGGCAA GGAAGGCTCCAAAGCCAACAGCAACAAGGAGGAGGATGGCACCGCTACCACCGCCAAGGAAGGTGGACACGGCGCCCAGAAAGTGAACATCGAGGAGGAG AAATTGATGAGATTCATAGTAATGGGACGCAAAAGCCTTCCTGACCCAAGCAAGAAAGGGCGCCCCTTCTGGGGGTTTGTCGATTTGGTCACCACTAACC TTGACCATGTCAAGGACGCTCTTAAACCAAAGGAGTACGAGACGTCGACACGTGGGAAGAGGCACGAGGAAGTGGCGAGGGCGGCCGGAGAAGGGATCTA CCGGATCCTGAGGCACAACCCGTCGGGCAAGAAGAAGAAGATGCACACACACCTTATTTATAAGCTGGAGCTGCCGGCGGAAGGGAAACAGAAGGAGCCC CAAGAGGCGCTCAACATCGAACGAAAAGGTTCGTTGGTGATCCAGATTAAGAACCCGGATGCAGCTGGTGGACCCGGTGGTGGGTTTGGCGGGCTTCAGG AGAAGCGGAGGGCCCAATATCCGGCCCATTTTCAGGGTCAGTTGGGACGGAGCAAGAGGTACGGGCCGGCTGACCCGCCGGATTTGTTGAATTACGAAGG GTGCGAGTTTCTGATGATATCGGCGTCGGATGACATTGAGGAGGAGCTGGGGTTGGAGTTGAAGACTGAGGAGGAGTGCGGGAGAGGAGAAGATGAGGAG GATGAGGAGTCGTGTTCGGATTTGGTAGGGGATTTTGGTGACGTGGTTGCTCCGACCCCGCTTCTGGAAGGCGGCTGGGCTTAG
AA sequence Show only first row Show all	>Lus10037300 pacid=23152595 polypeptide=Lus10037300 locus=Lus10037300.g ID=Lus10037300.BGIv1.0 annot-version=v1.0 MGQGGEKKTSTSDAQAVEILERGEIYFFYRPRVNREEAHSPDDVQRLYIVLRPESGVQDKQEPDSGKEGSKANSNKEEDGTATTAKEGGHGAQKVNIEEE KLMRFIVMGRKSLPDPSKKGRPFWGFVDLVTTNLDHVKDALKPKEYETSTRGKRHEEVARAAGEGIYRILRHNPSGKKKKMHTHLIYKLELPAEGKQKEP QEALNIERKGSLVIQIKNPDAAGGPGGGFGGLQEKRRAQYPAHFQGQLGRSKRYGPADPPDLLNYEGCEFLMISASDDIEEELGLELKTEEECGRGEDEE DEESCSDLVGDFGDVVAPTPLLEGGWA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16770			unknown protein		Lus10037300 [exp]	0	1
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10039743 [exp]	2.4	0.9200
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10039349 [exp]	7.5	0.9028
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10030891 [exp]	12.2	0.9074
AT1G68540		TKPR2, CCRL6	tetraketide alpha-pyrone reduc...		Lus10035016 [exp]	12.4	0.8715
AT1G70505			unknown protein		Lus10030895 [exp]	12.8	0.9010
AT2G18570			UDP-Glycosyltransferase superf...		Lus10041713 [exp]	24.4	0.8855
AT4G38520			Protein phosphatase 2C family ...		Lus10005054 [exp]	25.0	0.8885
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10022066 [exp]	25.0	0.8955
					Lus10031407 [exp]	26.8	0.8935
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10032415 [exp]	27.1	0.8888

Compare expression of checked genes

Lus10037300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.