Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78930 507 / 7e-175 Mitochondrial transcription termination factor family protein (.1) AT2G21710 89 / 3e-18 EMB2219 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) AT2G44020 84 / 8e-17 Mitochondrial transcription termination factor family protein (.1) AT4G14605 78 / 4e-15 Mitochondrial transcription termination factor family protein (.1) AT4G38160 76 / 9e-15 PDE191 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) AT4G02990 74 / 1e-13 RUG2, BSM RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) AT5G55580 72 / 5e-13 Mitochondrial transcription termination factor family protein (.1) AT3G18870 58 / 3e-09 Mitochondrial transcription termination factor family protein (.1) AT1G74120 54 / 2e-07 Mitochondrial transcription termination factor family protein (.1) AT2G36000 51 / 1e-06 EMB3114 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035714 [exp] 874 / 0 AT1G78930 582 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10042322 [exp] 100 / 4e-22 AT2G21710 720 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Lus10013854 [exp] 92 / 3e-20 AT4G38160 446 / 2e-158 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Lus10014567 [exp] 88 / 1e-18 AT2G34620 300 / 6e-101 Mitochondrial transcription termination factor family protein (.1) Lus10032120 [exp] 86 / 3e-18 AT2G34620 300 / 2e-101 Mitochondrial transcription termination factor family protein (.1) Lus10004614 [exp] 80 / 1e-15 AT2G44020 707 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10014877 [exp] 78 / 8e-15 AT4G02990 665 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Lus10022321 [exp] 74 / 2e-13 AT4G02990 540 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Lus10026571 [exp] 69 / 1e-12 AT4G38160 252 / 4e-83 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G001800 [exp] 578 / 0 AT1G78930 633 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.009G170300 [exp] 103 / 2e-23 AT4G38160 479 / 8e-170 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.004G209400 [exp] 99 / 2e-22 AT4G38160 481 / 3e-172 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.009G116200 [exp] 94 / 6e-20 AT2G21710 748 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Potri.013G116700 [exp] 83 / 1e-16 AT2G44020 764 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.017G067600 [exp] 74 / 1e-13 AT4G14605 571 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.016G072200 [exp] 72 / 2e-13 AT2G36000 280 / 1e-92 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Potri.014G137400 [exp] 72 / 3e-13 AT4G02990 669 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Potri.001G361800 [exp] 66 / 3e-11 AT5G55580 584 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.006G205000 [exp] 64 / 9e-11 AT2G36000 284 / 2e-94 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10037301 pacid=23152515 polypeptide=Lus10037301 locus=Lus10037301.g ID=Lus10037301.BGIv1.0 annot-version=v1.0 ATGAAAGATACACAGGAAGCCATTTCTATGTTCCTCCAGGGATTCGGAGTCTCCACTGAGGAATCCAGTTTCGTTGCTTCCAACTCCCCCAAGTATGCCA AGATGTTGATGGAAAGTGTGGAGGATTTGGAGGAATGGAGCTCGTGGACGACTGCTGATGATGGTGGTGAAGAGTTTGGGGAGTTGAAGGATTTTAAGGA GAAGGTGGTTCATATGGCCAAAGTTAAAGGTGATAATGGGAAAGTTGCCTTCTTGGAGAGTATCGGCTTGAATTTGTCCTCTTCCATGAATGTTGCTCGC TACCTATCCAAGGACTCGCTTCCTAGTTTGATTTACAAGGTCAAGTATATGAAGGACATTTTCTATTTTAGCAGTGGCGATAAAATAGTTTTTGGCAAGA ATGCTCGGCGAATGATGATGCATTTATCAATTCCCATCGATGAAGATTTGCAGCAGACGTTGTCCTTCTTTGAAAAGATTGAAGCAAGGCGTGGAGGTCT GGACATGTTGGGTTCCTCAGATGCCTCTTTCCGATATTTGGTTGAATCATTTCCCCGTATTCTCTCTCTGTCAGTAGATTCGCACCTTAAGCCTACGGTG GAATTTCTGGAAAGTATTGGAATTCCACCAAATCGTTTGGGGAACGTATTCTTACTGTTTCCACCGACTATCCTTTGGGGTGTCAAGGGCATTAGAAACA GAGTTAAAGCTTTCATAAAGTTTGAGCTTTGTTCATTTGCTGTTTCTCAGACAGGAACTGCTGATAAGAATATTGGCAAAGTACTCATAAAATATCCATG GGTTCTTTCTTCAGGCATTCTGGATAATTACTCTGACGTCATTTCCTTCTTTGATGTGAAGAAGGTTCCACGAGGCAGTGTGGAGAGGGCAATCCAAAGC TGGCCTCATATATTGGGATGTTCGACTGGTAAACTGAAGATCATGGTGGAACAGTTTAGCGCATTAGGTGTTAGAGACAAGAAGTTGGGTCAGGTTATTG CAACTAGTCCTCAATTGCTACTCAGGAAACCTAGTCAATTTCTACAAGTGGTGAAATTCTTGAAGGACCTTGGATTCACAGAGGAAGCCGTTGGAATGAT TCTCTGTCGTTGTCCGGAGATCTTTGCTGCCTGTATAGGCAGCACTCTGCGTAAGAAGATTGAATCTCTGGTTTCTATTGGGATTCATGAAGAACATCTC CCGCGAGTTATAAAGAAGTATCCGGAGATCCTTGTATCTGATTTTAGCCAAACTGTATATCCTCGGGTGAAGTACTTGATGGAGATGGGAATAACGAAGA AAGACGTAGGGTTCATGGTGAGAAGGTTCTCTCCTCTGGTAGGATACAGCATTGAGAAGGTGCTGAGACCAAAATATGAGTTTTTGGTGGAGTCAATGGA GAGGGAAGTGACCTCCCAAATTGCGGGAGGCCTCCCACACCATGGCCATTTGAGTGGTGTTTCTAGTAGTAGTAGAAAGCGGAAGTCTTCGAGGATGTTG AGGGATGGTGGGAAGAGGAGGTTCCACCGTGGCCGCCACAGCCATCGTGGTGTTAGGATGAGGGGTGTGACAAGATTGAGGAGTTCTAGACGGAGCAGGA TTCAAGTCGCCAAAGGGAAGAAGAAGAAGAAGAAGAAACCTGGTCGTGGTGGTGGTGGTTATGGGAGTTTTAAGAGGCAGAGGCTCAAGTGA
AA sequence Show only first row Show all	>Lus10037301 pacid=23152515 polypeptide=Lus10037301 locus=Lus10037301.g ID=Lus10037301.BGIv1.0 annot-version=v1.0 MKDTQEAISMFLQGFGVSTEESSFVASNSPKYAKMLMESVEDLEEWSSWTTADDGGEEFGELKDFKEKVVHMAKVKGDNGKVAFLESIGLNLSSSMNVAR YLSKDSLPSLIYKVKYMKDIFYFSSGDKIVFGKNARRMMMHLSIPIDEDLQQTLSFFEKIEARRGGLDMLGSSDASFRYLVESFPRILSLSVDSHLKPTV EFLESIGIPPNRLGNVFLLFPPTILWGVKGIRNRVKAFIKFELCSFAVSQTGTADKNIGKVLIKYPWVLSSGILDNYSDVISFFDVKKVPRGSVERAIQS WPHILGCSTGKLKIMVEQFSALGVRDKKLGQVIATSPQLLLRKPSQFLQVVKFLKDLGFTEEAVGMILCRCPEIFAACIGSTLRKKIESLVSIGIHEEHL PRVIKKYPEILVSDFSQTVYPRVKYLMEMGITKKDVGFMVRRFSPLVGYSIEKVLRPKYEFLVESMEREVTSQIAGGLPHHGHLSGVSSSSRKRKSSRML RDGGKRRFHRGRHSHRGVRMRGVTRLRSSRRSRIQVAKGKKKKKKKPGRGGGGYGSFKRQRLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78930			Mitochondrial transcription te...		Lus10037301 [exp]	0	1
AT5G63200			tetratricopeptide repeat (TPR)...		Lus10033033 [exp]	17.3	0.6673
AT5G60870		RUG3	RCC1/UVR8/GEF-like 3, Regulato...		Lus10042215 [exp]	18.7	0.6707
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Lus10029688 [exp]	22.4	0.6748
AT5G61370			Pentatricopeptide repeat (PPR)...		Lus10000207 [exp]	24.0	0.5955
AT1G56560		A/N-InvA	alkaline/neutral invertase A, ...		Lus10010900 [exp]	24.9	0.6264
AT5G19950			Domain of unknown function (DU...		Lus10043254 [exp]	29.6	0.6665
AT3G30280			HXXXD-type acyl-transferase fa...		Lus10034600 [exp]	34.6	0.6556
AT1G52620			Pentatricopeptide repeat (PPR)...		Lus10026791 [exp]	36.7	0.6306
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10010934 [exp]	43.7	0.6078
AT5G45780			Leucine-rich repeat protein ki...		Lus10029241 [exp]	45.6	0.6658

Compare expression of checked genes

Lus10037301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.