Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24400 134 / 2e-38 SAUR-like auxin-responsive protein family (.1) AT4G31320 125 / 1e-34 SAUR-like auxin-responsive protein family (.1) AT5G20810 79 / 3e-17 SAUR-like auxin-responsive protein family (.1.2) AT4G00880 75 / 1e-16 SAUR-like auxin-responsive protein family (.1) AT3G43120 76 / 2e-16 SAUR-like auxin-responsive protein family (.1) AT3G61900 74 / 6e-16 SAUR-like auxin-responsive protein family (.1) AT1G56150 71 / 5e-15 SAUR-like auxin-responsive protein family (.1) AT2G46690 69 / 2e-14 SAUR-like auxin-responsive protein family (.1) AT3G12830 69 / 4e-14 SAUR-like auxin-responsive protein family (.1) AT4G34770 67 / 5e-14 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035716 [exp] 246 / 2e-81 AT2G24400 157 / 9e-49 SAUR-like auxin-responsive protein family (.1) Lus10033348 [exp] 151 / 2e-44 AT2G24400 155 / 3e-48 SAUR-like auxin-responsive protein family (.1) Lus10026977 [exp] 112 / 1e-29 AT2G24400 184 / 1e-59 SAUR-like auxin-responsive protein family (.1) Lus10007561 [exp] 77 / 2e-17 AT4G34810 125 / 1e-38 SAUR-like auxin-responsive protein family (.1) Lus10034888 [exp] 75 / 4e-16 AT5G20810 210 / 2e-70 SAUR-like auxin-responsive protein family (.1.2) Lus10012184 [exp] 72 / 1e-15 AT4G34810 125 / 9e-39 SAUR-like auxin-responsive protein family (.1) Lus10010110 [exp] 72 / 2e-15 AT2G46690 124 / 1e-37 SAUR-like auxin-responsive protein family (.1) Lus10042378 [exp] 71 / 2e-15 AT4G34810 129 / 3e-40 SAUR-like auxin-responsive protein family (.1) Lus10026294 [exp] 70 / 7e-15 AT4G34810 124 / 3e-38 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G253800 [exp] 137 / 2e-39 AT2G24400 142 / 4e-43 SAUR-like auxin-responsive protein family (.1) Potri.008G003900 [exp] 134 / 4e-39 AT2G24400 110 / 1e-31 SAUR-like auxin-responsive protein family (.1) Potri.006G278100 [exp] 130 / 5e-37 AT2G24400 179 / 5e-58 SAUR-like auxin-responsive protein family (.1) Potri.012G023400 [exp] 73 / 7e-16 AT2G46690 125 / 4e-38 SAUR-like auxin-responsive protein family (.1) Potri.006G137200 [exp] 75 / 8e-16 AT5G20810 201 / 1e-66 SAUR-like auxin-responsive protein family (.1.2) Potri.018G063400 [exp] 73 / 1e-15 AT5G20810 219 / 3e-74 SAUR-like auxin-responsive protein family (.1.2) Potri.014G103300 [exp] 72 / 1e-15 AT2G46690 152 / 2e-49 SAUR-like auxin-responsive protein family (.1) Potri.015G006800 [exp] 72 / 1e-15 AT2G46690 128 / 2e-39 SAUR-like auxin-responsive protein family (.1) Potri.002G176400 [exp] 71 / 2e-15 AT2G46690 145 / 2e-46 SAUR-like auxin-responsive protein family (.1) Potri.004G164300 [exp] 69 / 4e-14 AT5G10990 170 / 3e-55 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10037302 pacid=23152432 polypeptide=Lus10037302 locus=Lus10037302.g ID=Lus10037302.BGIv1.0 annot-version=v1.0 ATGGATTCTTCCACTAGAAAATCAAACAACAAGATCAGCGACATTGTCAGCCTCCAACGTATGCTCAAGAAATGGAAACGCATCGCCACCACTAATAAGA CTGCACCCACCGCCACCGCCGCCGCCGCTGCCAAAACTACGACTACCGGTACCAGTACTAGCAAGAGCATCAAGTTCATAAAGCGGACCTTCTCCTTCAC GGATGTCTCGGCCACATCAAACGGCGCCGTTCCGAAGGGGTACGTGGCAATATCCGTGGGCCGGGAGGAGATGATGAAGAGGTACGTGGTCCCCACGGAG TATCTGGCCCACCGGGCTTTCGGGTTGCTGCTTAGGGAGGCCGAGGAAGAGTTCGGGTTCCACCAGGAAGGAGTGCTCCGGATTCCCTGCCACGTCGACG CCTTCGAGGAGATCTTGAAGGTCGTTAGAGGGAAAACGACGTCGTCGTCGTCGTCGTCGGATGATCACGTCCACAGCAGCAGCAGCATGCATTCATCGTC TGATGATGACCATGAGGAGAATGACGACCATGGTGGTCATCAGTTCGGGTTCCCGGCGTCTCCAGCTGTGAGTTGCTCGCCTTCGACGACCACGGCGTCT GGGGATTCGGATTATTCAGGTGAAACCATGTGCATGCCTGTCTCTCAAGTCTCACTGCTGTTTCTCACTGTCAATCTGCATGCCTCTCATGTGCATCCTC AGGCACCTCACCAATATCTCCTCGAAATCTTCCACCTCGCATGGGAAATGAAGCCCGCCTTCCGACTCGAATCCTCCGGCATCGACAAACATTTCGTCGG AATCACATACCCCGCGTACCCTGTTATGAACCCTTTAGGAATAGGCATCGACGACGACATTGTCTTATCGTTGGATATTAATCGAGATCCGTTCACAAAC AAAGACTCGCCATCGTCTCCTGCAAGGTTGGACGTCCTTATTGCCATGCGATGA
AA sequence Show only first row Show all	>Lus10037302 pacid=23152432 polypeptide=Lus10037302 locus=Lus10037302.g ID=Lus10037302.BGIv1.0 annot-version=v1.0 MDSSTRKSNNKISDIVSLQRMLKKWKRIATTNKTAPTATAAAAAKTTTTGTSTSKSIKFIKRTFSFTDVSATSNGAVPKGYVAISVGREEMMKRYVVPTE YLAHRAFGLLLREAEEEFGFHQEGVLRIPCHVDAFEEILKVVRGKTTSSSSSSDDHVHSSSSMHSSSDDDHEENDDHGGHQFGFPASPAVSCSPSTTTAS GDSDYSGETMCMPVSQVSLLFLTVNLHASHVHPQAPHQYLLEIFHLAWEMKPAFRLESSGIDKHFVGITYPAYPVMNPLGIGIDDDIVLSLDINRDPFTN KDSPSSPARLDVLIAMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24400			SAUR-like auxin-responsive pro...		Lus10037302 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10034032 [exp]	4.8	0.9360
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10041042 [exp]	13.0	0.9313
					Lus10024615 [exp]	13.6	0.9333
AT3G24750			unknown protein		Lus10025939 [exp]	14.8	0.9293
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10017285 [exp]	20.5	0.9279
AT5G63090	AS2	LOBB, LOB	Lateral organ boundaries (LOB)...		Lus10001139 [exp]	23.0	0.9241
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10039806 [exp]	24.1	0.9279
AT3G05390			unknown protein		Lus10029907 [exp]	29.1	0.9265
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10028992 [exp]	29.9	0.9278
AT3G14470			NB-ARC domain-containing disea...		Lus10002609 [exp]	34.5	0.9200

Compare expression of checked genes

Lus10037302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.