Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16800 456 / 7e-144 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035717 [exp] 558 / 7e-180 AT1G16800 1196 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G253700 [exp] 424 / 2e-132 AT1G16800 1405 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037304 pacid=23152424 polypeptide=Lus10037304 locus=Lus10037304.g ID=Lus10037304.BGIv1.0 annot-version=v1.0 ATGTCCATTAAGTTCATTTCTCGGAGAGAGCTACTGGATAAATGGAGAGGTATCGAGGAAGAGGAGGAACAGACTGAGGATGATGATCCCTTACTCATCA GCCGTCTTCATCGTCAGAAAGAAGAATGGTTCAAGGATGCGTTCACTTTCTTAATTGATTTGCCGAAAGAAAGCCACATATGGTGTGGGTTTTGGGATAT AATGGGGCCTCTTTTGGAAACGTTTTATAATTATTTCAAAGATGAGCGGCAAGATTCTCCTCTTAAGCTGCTGTGGAGGAGGATATCTGATGAAACGCAG CAGTGCATCCAGTGCATATCTCAGCACCATCAAGCACAAGACATGTACAATATGGAATACGAGTCAAGTTCCATAGGGCCCCTTCTTGACGTCCTACGAA GTCTAGACGAGGAAAGGTTGACTCTACACTTAAGACAGATAAATGCTAGACTGAAGAAAGAACAGTATAATCCTGAGAGGGATAATGCTGAAGTTGTTAG TTTCATGTACGAGGTCTTGATGTTTCCAGTCCTTCTGGATGACCAGTCCTTGTTTGTAGAGTTTGAGCTGTTTATTGAAGCAGTTGACAATATGCATGAA CTTGCTTTGGCCGGAGAACAGCAGTTTCCGGGTGTTTATGCACTGCTCTTTTGCAATAGAAGAGTACGTACTGTCGGTAGACGTTTAGCACGATCAATGG AGAAACTAAAGAGATCAACGGATTTGGAACCATTGCAGCCTTTACTTAACAAATTCATTGGGTTCTTGGAGTCTGAAGTGCTACCATCAGCTTCGAAGAC ATCTCGACCAAGAGCGCAGCTTGATCGCCTTTCAATATGGCTCGGAATTACATCATTGCTTGAGTTCTTGGAACCTCCAGCTTTTGAAGAAGGGATAATG GAGCGCTATCCCATCTTCTTTGATGTAGTGCTCAACCATGTCAGCGGTGACTCTGTGGAATTTTCTCATGCAGTGAACTTCTTAAAAGAACTGTTCAAGA TGCTTGGGCTTCTTATCATACACAGAGGTTACAAAATGAACCCACCTTGGCCTCCTTTTGAATGTGCTCACATGTGGGGCCCTTCACTTGTCTCCTGTTT GAAGGATTCTTCTCTTCATAATTCTCTTCGACAACCAGCATTTGACCTTATGGAAACGATTATAGTGTCTGATGCTGCGGCACTCCAATCAACACTAGTC AATGACTATACCCATGTTGGTGAGGATAGGGGAATTCATGACAAGTTGAATGATGATGACTACAATAGCCTCCCATTCACTTTGAGTATTGAAGAAAAGG ATACTAGCTGCTGGAGCGGGTTCAATGCTCAGAATAACATAACATGTCAGGAGTGTCGGGGATGGATGTGTGTCCCCATGTTGTGGATTGATGTCCTAGC TGATATGGATCCATCAATTTTACCAGTATCATTTTCCAAGGCTGTTTTCTGGGCTCGATCTCATTTAACATTGGTAGAACCTGAGAGCAGTGCACAAATG ACAACCCCGATCAGAACTTGGCTAACCTCTTCAGTCTCAGAAATCTCTGCTTGTGGAATTCCAGAATGA
AA sequence Show only first row Show all	>Lus10037304 pacid=23152424 polypeptide=Lus10037304 locus=Lus10037304.g ID=Lus10037304.BGIv1.0 annot-version=v1.0 MSIKFISRRELLDKWRGIEEEEEQTEDDDPLLISRLHRQKEEWFKDAFTFLIDLPKESHIWCGFWDIMGPLLETFYNYFKDERQDSPLKLLWRRISDETQ QCIQCISQHHQAQDMYNMEYESSSIGPLLDVLRSLDEERLTLHLRQINARLKKEQYNPERDNAEVVSFMYEVLMFPVLLDDQSLFVEFELFIEAVDNMHE LALAGEQQFPGVYALLFCNRRVRTVGRRLARSMEKLKRSTDLEPLQPLLNKFIGFLESEVLPSASKTSRPRAQLDRLSIWLGITSLLEFLEPPAFEEGIM ERYPIFFDVVLNHVSGDSVEFSHAVNFLKELFKMLGLLIIHRGYKMNPPWPPFECAHMWGPSLVSCLKDSSLHNSLRQPAFDLMETIIVSDAAALQSTLV NDYTHVGEDRGIHDKLNDDDYNSLPFTLSIEEKDTSCWSGFNAQNNITCQECRGWMCVPMLWIDVLADMDPSILPVSFSKAVFWARSHLTLVEPESSAQM TTPIRTWLTSSVSEISACGIPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16800			P-loop containing nucleoside t...		Lus10037304 [exp]	0	1
AT1G16800			P-loop containing nucleoside t...		Lus10035717 [exp]	2.0	0.9738
AT5G09470		DIC3	dicarboxylate carrier 3 (.1)		Lus10024540 [exp]	2.4	0.9755
AT2G07820			unknown protein		Lus10015035 [exp]	6.0	0.9674
					Lus10021651 [exp]	6.2	0.9580
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040892 [exp]	6.2	0.9712
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10035973 [exp]	6.6	0.9702
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10025169 [exp]	7.4	0.9684
AT3G12440			Polynucleotidyl transferase, r...		Lus10000103 [exp]	7.5	0.9670
AT1G70640			octicosapeptide/Phox/Bem1p (PB...		Lus10008047 [exp]	8.7	0.9564
AT5G18140			Chaperone DnaJ-domain superfam...		Lus10005699 [exp]	9.6	0.9523

Compare expression of checked genes

Lus10037304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.