Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10730 105 / 2e-27 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G15910 102 / 4e-26 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G32220 51 / 1e-07 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035719 [exp] 263 / 3e-88 AT5G10730 271 / 9e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020108 [exp] 85 / 2e-19 AT5G10730 427 / 5e-152 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010419 [exp] 51 / 2e-07 AT1G32220 397 / 5e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10000057 [exp] 41 / 0.0002 AT1G32220 201 / 1e-65 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G106300 [exp] 133 / 8e-38 AT5G10730 360 / 1e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G268000 [exp] 113 / 3e-30 AT5G10730 431 / 1e-153 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.018G013400 [exp] 110 / 2e-29 AT5G10730 422 / 2e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G136900 [exp] 61 / 5e-11 AT1G32220 328 / 8e-113 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037306 pacid=23152476 polypeptide=Lus10037306 locus=Lus10037306.g ID=Lus10037306.BGIv1.0 annot-version=v1.0 ATGGCATCCCGCCTGGTGAATTCAGGCTCCTCCTTCCCTAGATCGCTGTCGTCCGCGAGCAAAAGATTACTTTCTACGGCGGCTTCTAACGATGTTGAAG GATCCACCGCGCGAATTAAGGAACCAGGAGAGAAACAGCAAAAGTTTGGCACAAAGGTAACTGTTTTTCCCTCCGGTATCCACACATATCCAGGTCCTTA CCTATTTGATGTCAAATCTACCCTCCTTCGCACAGGAGACCTGCTTCAACCTGCTTCACTCAAGAATGTCTTCAATGGAATCACCTCTGTGATCTCTTGT GTTGGAGGTTTTTGCTCGCATTCTTACATGTATGATATAAATGGATCCGCCAATATTCATGCTATCACAGCTGCTGCAGAACAAGGAGTGATTTTGAGGC CAGGTTTCATACACGGTGTTCGCAGGGTCGGAAGGCATAACCTGAATTTGAGTATAATTGGTGCTCCTCTAGAAATGGCACTCCAACATGCAAGGATCTT AACCAAGATACCACTCATCGGTCCTCTTTTCATCCCGCCTATCAGTGCTGTTTCGGTAGCGAAAGTTGCAGTGGAAGCGGCAACTGATCCAGACATCCCA GCGGGCATTGTTGATGTGTATGCCATGAGAAAGATGAGTGTGGAACATGCGTGA
AA sequence Show only first row Show all	>Lus10037306 pacid=23152476 polypeptide=Lus10037306 locus=Lus10037306.g ID=Lus10037306.BGIv1.0 annot-version=v1.0 MASRLVNSGSSFPRSLSSASKRLLSTAASNDVEGSTARIKEPGEKQQKFGTKVTVFPSGIHTYPGPYLFDVKSTLLRTGDLLQPASLKNVFNGITSVISC VGGFCSHSYMYDINGSANIHAITAAAEQGVILRPGFIHGVRRVGRHNLNLSIIGAPLEMALQHARILTKIPLIGPLFIPPISAVSVAKVAVEAATDPDIP AGIVDVYAMRKMSVEHA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10730			NAD(P)-binding Rossmann-fold s...		Lus10037306 [exp]	0	1
AT3G56140			Protein of unknown function (D...		Lus10017422 [exp]	5.5	0.7946
AT5G51140			Pseudouridine synthase family ...		Lus10022437 [exp]	5.8	0.8357
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10005928 [exp]	6.2	0.8190
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Lus10028925 [exp]	16.9	0.7929
AT2G17695			unknown protein		Lus10041839 [exp]	19.7	0.8217
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10015067 [exp]	25.5	0.8093
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10022691 [exp]	40.8	0.7308
AT5G53500			Transducin/WD40 repeat-like su...		Lus10012846 [exp]	42.8	0.7633
AT5G67390			unknown protein		Lus10019291 [exp]	44.2	0.7691
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10021614 [exp]	46.2	0.7923

Compare expression of checked genes

Lus10037306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.