Plant FIBer expression Database

Lus10037307 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035720
[exp]
165 / 4e-52 AT3G56910 40 / 2e-04 plastid-specific 50S ribosomal protein 5 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G027600
[exp]
57 / 1e-10 AT3G56910 / plastid-specific 50S ribosomal protein 5 (.1)
Potri.006G029500
[exp]
56 / 4e-10 ND /
Potri.006G028500
[exp]
56 / 5e-10 ND /
Potri.006G028101
[exp]
46 / 5e-07 ND /
PFAM info
Representative CDS sequence
>Lus10037307 pacid=23152543 polypeptide=Lus10037307 locus=Lus10037307.g ID=Lus10037307.BGIv1.0 annot-version=v1.0
ATGGCTCTCGTTCTTCTCAACGTGGGTACTCCACTATGGTCTTCATCTTGCTGTTGTTCATCATCCACATCAGCTAAGTCTATTAGTTGTCTTCCCGTGT
TCCTTCATTTCCCCTTTCTGCAAATACCCATTAGCAGTTACTCTCAGTTATCTCTTCTCTTAACAAGTGGTTTGTTATCTGATGCTTGCTTCCTGCGTGG
CGGTTTATTCAACGTTTCAGTGCCCAGGTTGCACATGAAGCCCGTTTCTCTGCAGTGGAAACGTCTTGAAGGACGTAGCTCCAGCCTTGCCATTATCTCG
GTGAGGAACGTTGGGGTGATAACGAGGGCGACTTCCGAAACTCCAGATGGCGTCGAGCCTTCGAGCGATGCTGGTAATGAAGAGAGTGTGTCGATTGACA
AACTTCCGTTGGAGTCGAAGCTGCAGCTGAGGATTGAGCAGCAGGAGAAAATGAAACTGGCGAGGAAGATCAGGCTGAGGAGAAAGAGGCTTCTGAGGAA
GCGGAAGTTGAGGAAGAAAGGGCGATGGCCTCCATCCAAAATGAACAAGTTGAAGAATGTATGA
AA sequence
>Lus10037307 pacid=23152543 polypeptide=Lus10037307 locus=Lus10037307.g ID=Lus10037307.BGIv1.0 annot-version=v1.0
MALVLLNVGTPLWSSSCCCSSSTSAKSISCLPVFLHFPFLQIPISSYSQLSLLLTSGLLSDACFLRGGLFNVSVPRLHMKPVSLQWKRLEGRSSSLAIIS
VRNVGVITRATSETPDGVEPSSDAGNEESVSIDKLPLESKLQLRIEQQEKMKLARKIRLRRKRLLRKRKLRKKGRWPPSKMNKLKNV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G56910 PSRP5 plastid-specific 50S ribosomal... Lus10037307
[exp]
0 1
AT3G56910 PSRP5 plastid-specific 50S ribosomal... Lus10035720
[exp]
1.0 0.9934
AT3G15190 chloroplast 30S ribosomal prot... Lus10005538
[exp]
2.0 0.9711
AT5G65220 Ribosomal L29 family protein ... Lus10019653
[exp]
4.5 0.9660
AT1G29070 Ribosomal protein L34 (.1) Lus10013928
[exp]
4.6 0.9678
ATCG00900 ATCG00900.1, RP... CHLOROPLAST RIBOSOMAL PROTEIN ... Lus10027894
[exp]
6.0 0.9657
AT2G30695 unknown protein Lus10008364
[exp]
6.3 0.9670
AT1G64510 Translation elongation factor... Lus10023054
[exp]
7.0 0.9654
AT3G15520 Cyclophilin-like peptidyl-prol... Lus10037891
[exp]
8.7 0.9614
AT3G06120 bHLH MUTE, bHLH045 MUTE, basic helix-loop-helix (... Lus10034031
[exp]
9.5 0.9470
AT3G08920 Rhodanese/Cell cycle control p... Lus10002485
[exp]
12.0 0.9639

Lus10037307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.