Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03070 198 / 2e-58 MED8 mediator subunit 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035721 [exp] 204 / 1e-61 AT2G03070 369 / 2e-123 mediator subunit 8 (.1) Lus10035722 [exp] 77 / 1e-17 AT2G03070 83 / 3e-20 mediator subunit 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G253100 [exp] 217 / 2e-65 AT2G03070 501 / 7e-174 mediator subunit 8 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037308 pacid=23152261 polypeptide=Lus10037308 locus=Lus10037308.g ID=Lus10037308.BGIv1.0 annot-version=v1.0 ATGGAGTCGGGGATGCAGCAGGATCCTTCCCAGCTTCAAAACCAGCAGCAGCAACCGCCGGTAGTAGTGGCGGAGAGGCTGAACGCGGCGCTGCAGCAGC AGCTAAATTTAGAGTCCGTCAAGATGCGAGCTATCAGCCTCCACAAAGCCATCTCCCGCATCCTCGAAGACTTCGATGCCTACTCTCGCACCAACACCAC TCCAAAATGGCAAGATATTTTGGGGCAATATTCTATGGTGAACCTTGAACTTTTCAACATTGTGGATGAGATTAAGAAGGTCTCCAAGGCTTTTGTTGTA CACCCGAAGAACGTTAATGCAGAAAATGCTACAATACTACCCGTTATGCTGTCCTCAAAGTTACTACCTGAGACAGAAATAGATGATAGCTTGAAGAGAG AGCAATTACTTCAGGGGATGCAAAACCTGCCTGTCTCTTCACAGATTGAGAAGTTAAAGCATGCTTCTGGCACGCCACTCATGACAAGATCAGCCGCGTC TCCTTCTACAGCTACAAGTGCCACTTTCTTTGATAACACAACAACTTCCCCTCTGCCATATGCTAACTCACCCAGGTCTGGTACAAACATGATGAATACA CCCTCTCCTCAACAACAAACACAACAACAGCAACATCAACAGCAACAAAGACAAAAGTTGATGTCGTCGTTGCCTCAGCATCAGCAGATTCTTGCTCAAC AATTCAGGCAATCTTCTATGCAAGGCCTTGCACAGATGCAATTTTCTCAGCCAATGGGACACCAACAATTTCAGAGTAGGCAGCTGTCTGCTGGCCATCT TCAGCATGGAATGGCTCAGGGCCAACTTGGTCAAGGCAATCAGTTAAATCGTCATTTGAATCAGTTTACCAATACTGCTAATACTGCTTTGTTCAATGCT GCTCAAGGAGCACCCAGCACTCAGATGATCCCAAATATGTCTGCTATTGCATCGCAGCCGCTAATGTCACGAATGCAGCAGTCTCACAAGTCCTTGGGGC ATGAACTCTTGGAATCTGGTGGCTCGCTAGGGTCTGACACGGGCCGGTCCAACGAGAAAGCGGATGTGATCTGTGGCGGGGGAAGAGGAGGAAGGTTATC GGCGGAACTGTGA
AA sequence Show only first row Show all	>Lus10037308 pacid=23152261 polypeptide=Lus10037308 locus=Lus10037308.g ID=Lus10037308.BGIv1.0 annot-version=v1.0 MESGMQQDPSQLQNQQQQPPVVVAERLNAALQQQLNLESVKMRAISLHKAISRILEDFDAYSRTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVV HPKNVNAENATILPVMLSSKLLPETEIDDSLKREQLLQGMQNLPVSSQIEKLKHASGTPLMTRSAASPSTATSATFFDNTTTSPLPYANSPRSGTNMMNT PSPQQQTQQQQHQQQQRQKLMSSLPQHQQILAQQFRQSSMQGLAQMQFSQPMGHQQFQSRQLSAGHLQHGMAQGQLGQGNQLNRHLNQFTNTANTALFNA AQGAPSTQMIPNMSAIASQPLMSRMQQSHKSLGHELLESGGSLGSDTGRSNEKADVICGGGRGGRLSAEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03070		MED8	mediator subunit 8 (.1)		Lus10037308 [exp]	0	1
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10008667 [exp]	1.7	0.8872
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10014260 [exp]	4.9	0.8618
AT5G07670			RNI-like superfamily protein (...		Lus10038927 [exp]	5.7	0.8597
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10029476 [exp]	6.0	0.8732
AT5G11860		SSP5	SCP1-like small phosphatase 5 ...		Lus10015787 [exp]	7.4	0.8527
AT2G31580			tRNAHis guanylyltransferase (....		Lus10041070 [exp]	9.4	0.8223
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Lus10011470 [exp]	15.1	0.8452
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10004188 [exp]	15.2	0.8445
AT1G63110			GPI transamidase subunit PIG-U...		Lus10006320 [exp]	15.5	0.7939
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Lus10004278 [exp]	17.7	0.8196

Compare expression of checked genes

Lus10037308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.