Plant FIBer expression Database

Lus10037309 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G50430 471 / 7e-166 ST7R, PA, LE, 7RED, DWF5 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2)
AT3G52940 81 / 8e-17 ELL1, HYD2, FK FACKEL, EXTRA-LONG-LIFESPAN 1, Ergosterol biosynthesis ERG4/ERG24 family (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035723
[exp]
555 / 0 AT1G50430 759 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2)
Lus10034811
[exp]
536 / 0 AT1G50430 724 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2)
Lus10033356
[exp]
534 / 0 AT1G50430 751 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2)
Lus10003377
[exp]
67 / 6e-12 AT3G52940 581 / 0.0 FACKEL, EXTRA-LONG-LIFESPAN 1, Ergosterol biosynthesis ERG4/ERG24 family (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G253200
[exp]
495 / 1e-175 AT1G50430 764 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2)
Potri.008G005200
[exp]
488 / 8e-173 AT1G50430 753 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2)
Potri.006G116200
[exp]
74 / 2e-14 AT3G52940 508 / 0.0 FACKEL, EXTRA-LONG-LIFESPAN 1, Ergosterol biosynthesis ERG4/ERG24 family (.1.2)
Potri.010G253301
[exp]
65 / 3e-13 AT1G50430 49 / 6e-08 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0115 Steroid_dh PF01222 ERG4_ERG24 Ergosterol biosynthesis ERG4/ERG24 family
Representative CDS sequence
>Lus10037309 pacid=23152397 polypeptide=Lus10037309 locus=Lus10037309.g ID=Lus10037309.BGIv1.0 annot-version=v1.0
ATGGTTGAATCCAACATTGTTCATTCCCCTCTCGTCACCTACGTCTCCGTCGTCTCCCTCCTCACTCTCTGTCCGCCTTTTGTTATTCTGCTATGGTATA
CGATGGTTCATGCAGACGGTTCAGTATCCCAATCGTGGGATTATCTAAGTCGTACCGGTTTGAAGGTACTTGTAGAGATATGGCCAAGACCAACTGCTAC
TGCCTGGCAAATAATAGCTTGTTATGCTGCATTTGAGGCTGCACTTCAGCTTCTTTTACCTGGTAAAACAGTTGAAGGACCAATTTCTCCTAAAGGGAAC
CGACCTGTCTACAAGGCGAACGGTGTGCTTGCATATGCAGTGACCATTGTTACATATGTTGGTCTATGGTGGTCTGGAATATTGAACCCTGCAATGGTTT
ATGATCACTTGGGAGAAATTTTCTCAGCTCTGATTCTCGGAAGCTTAGTCTTCTGTGTTTTCCTGTATATTAAAGTAAGCCTGTCTCTGCTGAGAATTTA
CTTGACGTCTGAGACTTTTGTTGTTGATGTCCTTACCCGAGTGTTCTATTTGTGCCAGGGTCACGTGGCACCATCATCAACGGATTCTGGCTCCCTTGGG
AATATAATTATTGATTTCTACTGGGGTATGGAGTTATATCCTCGAATTGGTAAGAACTTTGACATCAAAGTATTCACAAATTGCAGATTTGGGATGATGT
CTTGGGCAGTTCTTGCATTGACCTACTGCTTTAAGCAGTATGAGCTGTATGGAAAAGTGGCAGACTCCTTGCTGGTTAATACAATACTGATGCTGGTGTA
TATCACAAAGTTCTTCTGGTGGGAGGCTGGGTATTGGAATACAATGGACATAGCTCATGATCGAGCTGGCTTTTATATTTGTTGGGGATGCTTAGTGTGG
GTTCCCTCTATATATACTTCTCCTGGTTTGTACCTTGTAAACCATCCGGTGGACCTTGGATCTCAGTTTATCCCCTACTTCTATGTGATATATCTCACCA
TCCTTCTTGTGGACCGAGCTACACGAGATGATGATCGCTGCCGTTCGAAGTATGGAAAATACTGGAGGATATACTGCGACAAGGTTCCTTACCGCATTAT
ACCCGGAATCTACTGA
AA sequence
>Lus10037309 pacid=23152397 polypeptide=Lus10037309 locus=Lus10037309.g ID=Lus10037309.BGIv1.0 annot-version=v1.0
MVESNIVHSPLVTYVSVVSLLTLCPPFVILLWYTMVHADGSVSQSWDYLSRTGLKVLVEIWPRPTATAWQIIACYAAFEAALQLLLPGKTVEGPISPKGN
RPVYKANGVLAYAVTIVTYVGLWWSGILNPAMVYDHLGEIFSALILGSLVFCVFLYIKVSLSLLRIYLTSETFVVDVLTRVFYLCQGHVAPSSTDSGSLG
NIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVLALTYCFKQYELYGKVADSLLVNTILMLVYITKFFWWEAGYWNTMDIAHDRAGFYICWGCLVW
VPSIYTSPGLYLVNHPVDLGSQFIPYFYVIYLTILLVDRATRDDDRCRSKYGKYWRIYCDKVPYRIIPGIY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G50430 ST7R, PA, LE, 7... PARVA, LEPIDA, DWARF 5, DELTA5... Lus10037309
[exp]
0 1
AT3G18000 XPL1, NMT1, XIP... XIPOTL 1, N-METHYLTRANSFERASE ... Lus10031348
[exp]
1.0 0.9380
AT3G17430 Nucleotide-sugar transporter f... Lus10017115
[exp]
5.3 0.8621
AT3G03960 TCP-1/cpn60 chaperonin family ... Lus10002625
[exp]
13.0 0.8864
AT1G02460 Pectin lyase-like superfamily ... Lus10038059
[exp]
13.9 0.8872
AT5G20850 ATRAD51 RAS associated with diabetes p... Lus10039928
[exp]
15.7 0.8767
AT3G08030 Protein of unknown function, D... Lus10029503
[exp]
17.4 0.8741
AT1G18640 PSP 3-phosphoserine phosphatase (.... Lus10017851
[exp]
18.5 0.8457
AT4G17910 transferases, transferring acy... Lus10001270
[exp]
20.5 0.7958
Lus10023382
[exp]
23.7 0.7642
AT1G73600 S-adenosyl-L-methionine-depend... Lus10009056
[exp]
25.3 0.8447

Lus10037309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.