Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 715 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 694 / 0 EFR EF-TU receptor (.1) AT3G47110 686 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 665 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 655 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 457 / 1e-142 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT3G49670 437 / 2e-136 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 440 / 2e-135 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 439 / 6e-135 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G65700 431 / 2e-134 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037311 [exp] 1079 / 0 AT3G47570 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033362 [exp] 1021 / 0 AT3G47570 784 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033329 [exp] 998 / 0 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033363 [exp] 997 / 0 AT3G47570 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033384 [exp] 993 / 0 AT3G47570 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033330 [exp] 987 / 0 AT3G47570 783 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031043 [exp] 966 / 0 AT3G47570 756 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035429 [exp] 944 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035726 [exp] 892 / 0 AT3G47570 716 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G034000 [exp] 824 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 818 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 815 / 0 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 813 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 813 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 807 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 798 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 796 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 791 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228300 [exp] 785 / 0 AT3G47570 743 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10037310 pacid=23152300 polypeptide=Lus10037310 locus=Lus10037310.g ID=Lus10037310.BGIv1.0 annot-version=v1.0 ATGTCAAGACAATTCGTCCCACTGTCTACATTCTCCTCTCTTCTAATCCTCCTGAATCTCCTTTTGTTTTCTCCTGACGCTTGTAGCTATCCTTTCCGAG CAAATGCTACAACCAATAACCAGACAGACCAACTAGCCCTGCTTCAATTCAAGAATTCCATCACCATTGACCCACTTCAGATTCTCCGGTCATGGAACGA TTCCGTCCATTTCTGCAACTGGGTCGGAATCTCCTGCGACGTCCAACAAACTAGAGTCGCATCACTGGTCCTTCATAGTTACAACCTGGTCGGCACTCTA TCTCCTCACATCGGAAATCTCACATTCCTTCAGCTTATCAACCTCGAGAAGAACAATTTCCACGGAATTATTCCTCGAGAGATTGGGAACCTTCTCCAGC TTGAGGAATTCAACCTCACCAGCAACTCCTTTGATGGTGTCATCCCTGTCAACCTGACCAGATGCTCCAACCTCAGGATCCTGAGACTTCAGAATAATTT CCTCAAAGGAAACATCCCTGCCGAAATCGGATCTTTGTCCAAGCTGGAGATTGTTAGGTTCGGGACCAATAACCTGACTGGAGAAATTCCGCATTCAGTT GGGAACCTGACGAACCTGATCGATTTCGGAGCTGCCTATCTCAACTTGGTGGGCACCATTCCTGAAAGCTTAGGCAATCTAAAGAGACTGAAATCCATCT CCCTCGGACTGAACCAAATGACCGGTAAGATTCCTGCGTCCTTCTTTAACATAACATCGATCAACACCATTGCCATCCCTTGGAATCAGTTCGAGGGTTC TTTGCCGGTGGATATAGGATTCACTTTAACAAACCTCCAGTATTTTGGAATCTCCAAGAACAATTTTTCCGGAATGATTCCTGACTCGTTCTGCAACGCC ACGCAGCTGAAACTAATCGACATGAATAAGAACGATTTCCAGGGACAAATCCCCACTTGTCTCGGGAATTTGCCCCAGCTGGACTGGCTATCTGTTGGGA TCAACCGTCTCGGAAGTAATTCCTCTCGCGATTTCGATTTTCTAACTGGGTTGCAGAATTGCAGCTGGCTGGAATTGTTGTCCATAACTGACAACAACTT TGGAGGGATTCTACCAAACTCCATAGCCAACCTTTCTGTCCAACTCACCATACTGGACGTGTCAGAAAACTACATAAACGGACTACTTCATGATGTAGGC CTGCAAAGATATGTCAATCTAAACTCGGTAGATTTTTCATTTAATCGATTCGAAGGATCAATTCCTTTGTACTTTAGTATGTTCCAGGACTTGCAAAGCT TGCGGTTGACAGGAAATCAGTTATCAGGTCGAATTCCCCCGTCCATTGGCAACCTCACTCAGCTGTCCGAACTTGACATTTCGATCAACAATATCGTAGG TGCTATTCCTGTGAGTCTTGGATCATGTCTTCAGTTGATTTACTTTGATATTTCGAGAAACAAACTCACCGGAGCTATACCTAGCCAAGTTTTCCGTCTT CCATCATTATCAAAATTATTGAACGTGTCACACAACTTGTTCACTGGACACTTGCCTCGGGAATTAGGGAAGCTGAACAATTTGAACGCTTTGGATATTT CTTATAATATCCTGACAGGGGAAATTCCAAACACCATTGGAGATTGCAAGGGTTTGGAATATCTCTACTTGCAAAGTAACTCATTCAATGGCACCCTCCC TCCATCATTAGCTTCTCTGAAAGGCCTACAAGAGCTGGATCTTTCGCGCAACGAGTTACAGGGAGAGATCCTATCGGATCTTCAGAACAACAACCTTCTC CGATATCTCAATCTTTCATTCAATCATCTCCAAGGCCAGGTACCTAAAGAAGGAATCTTTTCAAATGCTAGTGCAATATCGTTGATGGGAAATATCAGGC TCTGTGGTGGTGTATCAGAGCTTCACCTCCCAAACTGTCCAACTAAAGCTGCTAAGCACAGAATAAATTATAGAACAGTTGTGCTGACAGCGGTTATTGC ATCTGTGGGTCTATTCCTTCTCTCATTGTTAGCCATCAAGTTGATAGTCAAGGCAAGGTCAAAGAAGAAACCATCATCACTAGAAGATCCAAGAACACAC AATTTCATGAGGATCTCTTATAACGATCTCTACAGAGCAACTAACAGATTCTCACCAGAAAATTTGATTGGTTCTGGAAGTTTTGGTACTGTTTATCAAG GCAAACTAGATGATCAAAACGACAGGCTAGTAGCTGTGAAGGTGCTCAACTTGCAGCAAAACGACAAGGCTTATAAGAGCCTGGCAGCAGAATGTAATGC TTTGAGAAGTATCAGGCATAGGAATCTTGTGAAGGTCGTGTCTTACTGCTCCAGCTTGGACCACAAAGGAGTAGAATTCAAAGCTCTGGTGTTTGAATAC ATGGCTAACGGTAGTTTGGAGAAGTGGCTGCACCCCGTGGATAATGGATCCCGTAATAATCTGAGTCTGGCTCAAAGAGTCAACATTGCTGTGGATGTGG CTAATGCACTGCACTATCTTCATGACCTATGTGAAACTCCAGTTGTCCACCATGATCTGAATCCGAGCAACGTACTTCTCGACGTTGACATGGTGGCTCA TGTAAGTGATTTCGGCCTGGCGAAGTTTCTGTCGAATACTAATGCCAAAACAAGCACGATAGGTGTGCAAGGAACAGTCGGTTACGCTGCACCAGAATAT GGGATGGCTAGTGCAGCATCAAAGGAAGGGGATGTGTATAGCTTTGGGATTGTGGTACTGGAAATGTTGTCTGGGATAAGGCCGACGCATGAAATGTTCA AAGACGGTCTGAATATCCGCGACTATGTTAAGGCAGCACTGCCTGACAGAATATCATCAGTGATAAGATCAAATTTGTTCCCACCAACGGAATTGTCCAT AGCAGCCAGTGACAATGAAATATCGGAACAACTTCATCGTCCTTTACCAGAGAAGGTGCATCGGTGTCTGGTTTCTCTACTTGAGTTGGGAGTCACTTGC TCTGCAGACTCACCGCAACAACGAATGAAAATCGCAGATGTTGTAGGAAAATTGCATTCTGTCAGTGCTGAATTTCTCCATAACCCGAGTCGATCTGTTA GAGTAAGGGTTAATCACGAGAGAAACTAA
AA sequence Show only first row Show all	>Lus10037310 pacid=23152300 polypeptide=Lus10037310 locus=Lus10037310.g ID=Lus10037310.BGIv1.0 annot-version=v1.0 MSRQFVPLSTFSSLLILLNLLLFSPDACSYPFRANATTNNQTDQLALLQFKNSITIDPLQILRSWNDSVHFCNWVGISCDVQQTRVASLVLHSYNLVGTL SPHIGNLTFLQLINLEKNNFHGIIPREIGNLLQLEEFNLTSNSFDGVIPVNLTRCSNLRILRLQNNFLKGNIPAEIGSLSKLEIVRFGTNNLTGEIPHSV GNLTNLIDFGAAYLNLVGTIPESLGNLKRLKSISLGLNQMTGKIPASFFNITSINTIAIPWNQFEGSLPVDIGFTLTNLQYFGISKNNFSGMIPDSFCNA TQLKLIDMNKNDFQGQIPTCLGNLPQLDWLSVGINRLGSNSSRDFDFLTGLQNCSWLELLSITDNNFGGILPNSIANLSVQLTILDVSENYINGLLHDVG LQRYVNLNSVDFSFNRFEGSIPLYFSMFQDLQSLRLTGNQLSGRIPPSIGNLTQLSELDISINNIVGAIPVSLGSCLQLIYFDISRNKLTGAIPSQVFRL PSLSKLLNVSHNLFTGHLPRELGKLNNLNALDISYNILTGEIPNTIGDCKGLEYLYLQSNSFNGTLPPSLASLKGLQELDLSRNELQGEILSDLQNNNLL RYLNLSFNHLQGQVPKEGIFSNASAISLMGNIRLCGGVSELHLPNCPTKAAKHRINYRTVVLTAVIASVGLFLLSLLAIKLIVKARSKKKPSSLEDPRTH NFMRISYNDLYRATNRFSPENLIGSGSFGTVYQGKLDDQNDRLVAVKVLNLQQNDKAYKSLAAECNALRSIRHRNLVKVVSYCSSLDHKGVEFKALVFEY MANGSLEKWLHPVDNGSRNNLSLAQRVNIAVDVANALHYLHDLCETPVVHHDLNPSNVLLDVDMVAHVSDFGLAKFLSNTNAKTSTIGVQGTVGYAAPEY GMASAASKEGDVYSFGIVVLEMLSGIRPTHEMFKDGLNIRDYVKAALPDRISSVIRSNLFPPTELSIAASDNEISEQLHRPLPEKVHRCLVSLLELGVTC SADSPQQRMKIADVVGKLHSVSAEFLHNPSRSVRVRVNHERN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10037310 [exp]	0	1
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10019926 [exp]	1.0	0.9585
					Lus10004442 [exp]	3.2	0.9316
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10005338 [exp]	4.2	0.9507
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10026496 [exp]	4.7	0.9309
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10032219 [exp]	5.0	0.9409
					Lus10031026 [exp]	5.3	0.9384
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Lus10018231 [exp]	8.1	0.9391
AT2G42140			VQ motif-containing protein (....		Lus10004172 [exp]	9.3	0.9148
AT3G53810			Concanavalin A-like lectin pro...		Lus10003224 [exp]	9.5	0.9482
					Lus10000100 [exp]	10.0	0.9412

Compare expression of checked genes

Lus10037310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.