Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47110 605 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47570 604 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 563 / 0 EFR EF-TU receptor (.1) AT3G47090 557 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 540 / 6e-176 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 350 / 9e-105 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 338 / 7e-99 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 322 / 4e-94 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 320 / 1e-93 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 321 / 3e-93 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037310 [exp] 1071 / 0 AT3G47570 744 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033384 [exp] 861 / 0 AT3G47570 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033362 [exp] 849 / 0 AT3G47570 784 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033330 [exp] 831 / 0 AT3G47570 783 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033363 [exp] 810 / 0 AT3G47570 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033329 [exp] 807 / 0 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035429 [exp] 782 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031043 [exp] 781 / 0 AT3G47570 756 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035726 [exp] 746 / 0 AT3G47570 716 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G034000 [exp] 715 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 711 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 708 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 693 / 0 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 690 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 689 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 689 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 687 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 687 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 677 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10037311 pacid=23152560 polypeptide=Lus10037311 locus=Lus10037311.g ID=Lus10037311.BGIv1.0 annot-version=v1.0 ATGCGGCCCCGAATTTCACCGAAGCCTCGCAGGACGATAGCCAACCGCCGGCCGTCAAAATACACTCATCATGTTCCCAAAATCCCAACCCAAGAAAATG TCAAACAATTCCAAACCACTTTCGCCAGTCTCCTCCATGTTCATTCTAAACTTCATTCTGCTGTTGTCAGAATTCACCCATCATCCAACTGCTTCCACCA CCAACAACGATCCCGACCGGCTCTCCTTCTCGAATTCAGCAAATCAATATCCAGAGACCCGCTTGGAGTTCTCGATTCATCGAACAGTTCTACCCATTTC TGCAACTGGGTCGGAGTCTCCTGCAACCTACAACAAAGAGTCACTTCTCTGGTTCTGAACCAACTAGACCTTTCAGGAACTTTGTCTCCACACATTGGCA ATCTCACTTTCCTGAAAGCGATCAACTTGGAGAACAACACGTTCCGTGGTCAGATTCCGCAACAAATCGGGAAACTTTTTCACCTCCAGGAATTAAATCT CAGTAGGAACGCTTTCATTGGCGAAATTCCTGACAACCTGACTCGTTGTTCGCAGCTTCGGATCCTGAGGGACGTCCCTGACGAGATCGGGTCCTTGTCA AAACTAGAGTTCATCAGGCTTCAGCAAAATAACCTGACAGGAAGGATTCCTCCTTCATTAGGGAACCTGCCCAAGCTGATCGACTTTGGAGCTTCTTACA ACAACCTCGTTGGAAACATTCCAGAGAGCTTAGGCCGCGGCCTAAGGAGCTTGTACTCAATTTCTCTCGGGATAAACCAAATGACAGGAACGATTCCTCG ATATTTTTTTAACATCACATCTCTCAACACCATTGCTATTCCTTGGAATCAGTTTGAAGGTCGGTTGCCAATGGATATAGGCATCACTTTGCCAAACCTA GAAATGTTTGCTATTTCCAAGAACAGGTTTTCTGGCATCATACCGAAGTCCTTCTGCAATGCCACACAGCTGCGAATGCTCGACATGAATGAGAACAGTT TTGCGGGACGAATTCCCAATTGTATTGGGAATTTGCCCCATCTGAACTGGCTGTCAGCCGGTTTCAACCGTCTTGGCCGGAATTCGGCAGGTGACTTGGA GTTCGTAACTGGCTTACAGAATGCTACTCAAATGCAACTGTTTGTCTTAAAGGGTAACAACTTTGGAGGCATTTTCCCCAACTCTGTAGCTAATCTCTCG GTCCAGCTAACGAGACTTGACGTTTCGCTGAATCAAATACGAGGAGGCATCCCTTCCGGCTTGGACAAATTCGTCAACTTAAACTTCGTGGATCCATCAT TTAACCTCCTACAGGGCGCCATTCCACCCTGCTTTACGAAGCTCCACAACTTGCGGAGCTTGCACTTGGCAAGAAACCGATTCTCTTGTCAGATTCCGTC CTCCATTGGCAACCTTACTCAATTGCTTGAACTAGACATGTCAAGTAACAGACTTGACACGTCAGTTCCTTCAAGTCTAGGGTCGTGTTCTGAGTTGATT TACTTGGACATTTCGAGTAACAACGTCGGTGGAAATCTACCTCGGGAGGTGTTCAATCTTCCTTCTTTGACCCAATCATTTGATCTTTCACACAACTTGT TTATCGGCAGCCTGCCTCCAGATATAGGGAAGCTAAACAATCTGAATGCTTTAGATATTTCTCATAATCTTTTGTCCAGAGAAATTCCGAACGACATTGG TAACTGCAAGAGCTTGGAGTATCTTTACTTGCAAGGAAACTCCTTCAACGGTACCATCCCTCCATCTTTAGCATCCTTGAAAGGACTCCGCGAGCTGGAT CTCTCTCGTAACAAGTTACGAGGATCGATCCTACGCGATCTTCAGAGCAACAACCTTCTCCAGTATCTGAATCTTTCCTTCAATCAACTCAAAGGTGAGG TGCCGAAAGAAGGCATCTTTTCGAATGCTACCGGTATATCTTTGATCGGTAATGCTATGCTTTGTGGTGGTGTTCCGGAGCTGAATTTACCAACATGCCC TGCTAAACTAAGCAATAAGCATGATAATATAAAGTATCAACCAATTCTTGTCACAGTAGTTGCTGTTTTAGCAGCTATATCCCTTCTTTCAATTTTAGCA TTTCAACTGATGAAAAGATCAAAGAAGAGGGCGGCGCTTGAAGAACCAAGATTACCAAGTTTCACAAGGGTCTCTTACAGAGACCTCTACAAGGCAACCG ATGGGTTCTCGCCTGAAAGTCTGATCGGTTCGGGCAGTTTTGGAAATGTCTATAAAGGGAAACTGGATGAGAATAATAACACAGTACCAGTAGCTATAAA AGTTCTCAACTTGCAGCATAGGAAGGCTAGTAAGAGCTTGGCAGCAGAATGTAAAGCGTTGAAACACGTAAGGCATCGAAATCTCGTGAAGGTCGTGTCT TACTGTTCGAGCTTGGATCACAAAGGAGAAGAATTCAAAGCTCTGTGGCTTCATCCCACAAACAGATCCGTAAATCTGAGTCTGGTTCAAAGACTCAACA TTGCGATAGATGTGGCATTTGCACTTCACTATCTTCATGAACTGTTCGAAACGCCGATCGTCCACCATGATCTGAAGCCGGGAAATGTACTTCTCGATGA TGAAATGGTGGGCCACGTAAGTGATTTCGGTCTTGCAACGTTTCTTTCAGGTGCTCATTCGAACACGAGCACAGTTGGGCTTCGGAATCCTCCTCCTAGA AATGTTTTCGGGGAGAAACCGACACACGAAATGTTCAACGACGGACTGAATCTCCATGACTACGTCAAGGATGCACTGCCTGCAGGCAATCTTTGTTCAG TGACCGACCCGATGTTGGTGGACATCCAAAGGCGAGAAACAGAAGCATCCACTTCTCAAGTAAATGAAATATCAGAACAAGTCAACCATCATCGTCCAGA AAAGGTACACGAGTGCTTGGCTGATGTACTTGATATTGGAGTCAGTTGTTCTGCTGAATCACCACAACAGCGAACGAAAATTGCAGATGCTGTAGGAAAA CTGCATCATATCAGAGACGATTTCTCAGAAACTCAATTCGATCCAGGACAAATCAAGCGGTATAAGGCTGAAGAGGGCTAA
AA sequence Show only first row Show all	>Lus10037311 pacid=23152560 polypeptide=Lus10037311 locus=Lus10037311.g ID=Lus10037311.BGIv1.0 annot-version=v1.0 MRPRISPKPRRTIANRRPSKYTHHVPKIPTQENVKQFQTTFASLLHVHSKLHSAVVRIHPSSNCFHHQQRSRPALLLEFSKSISRDPLGVLDSSNSSTHF CNWVGVSCNLQQRVTSLVLNQLDLSGTLSPHIGNLTFLKAINLENNTFRGQIPQQIGKLFHLQELNLSRNAFIGEIPDNLTRCSQLRILRDVPDEIGSLS KLEFIRLQQNNLTGRIPPSLGNLPKLIDFGASYNNLVGNIPESLGRGLRSLYSISLGINQMTGTIPRYFFNITSLNTIAIPWNQFEGRLPMDIGITLPNL EMFAISKNRFSGIIPKSFCNATQLRMLDMNENSFAGRIPNCIGNLPHLNWLSAGFNRLGRNSAGDLEFVTGLQNATQMQLFVLKGNNFGGIFPNSVANLS VQLTRLDVSLNQIRGGIPSGLDKFVNLNFVDPSFNLLQGAIPPCFTKLHNLRSLHLARNRFSCQIPSSIGNLTQLLELDMSSNRLDTSVPSSLGSCSELI YLDISSNNVGGNLPREVFNLPSLTQSFDLSHNLFIGSLPPDIGKLNNLNALDISHNLLSREIPNDIGNCKSLEYLYLQGNSFNGTIPPSLASLKGLRELD LSRNKLRGSILRDLQSNNLLQYLNLSFNQLKGEVPKEGIFSNATGISLIGNAMLCGGVPELNLPTCPAKLSNKHDNIKYQPILVTVVAVLAAISLLSILA FQLMKRSKKRAALEEPRLPSFTRVSYRDLYKATDGFSPESLIGSGSFGNVYKGKLDENNNTVPVAIKVLNLQHRKASKSLAAECKALKHVRHRNLVKVVS YCSSLDHKGEEFKALWLHPTNRSVNLSLVQRLNIAIDVAFALHYLHELFETPIVHHDLKPGNVLLDDEMVGHVSDFGLATFLSGAHSNTSTVGLRNPPPR NVFGEKPTHEMFNDGLNLHDYVKDALPAGNLCSVTDPMLVDIQRRETEASTSQVNEISEQVNHHRPEKVHECLADVLDIGVSCSAESPQQRTKIADAVGK LHHIRDDFSETQFDPGQIKRYKAEEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10037311 [exp]	0	1
AT1G04420			NAD(P)-linked oxidoreductase s...		Lus10003751 [exp]	1.0	0.9376
AT5G25620		YUC6	YUCCA6, Flavin-binding monooxy...		Lus10041729 [exp]	3.2	0.9249
AT4G00165			Bifunctional inhibitor/lipid-t...		Lus10015883 [exp]	5.5	0.9167
AT5G08250			Cytochrome P450 superfamily pr...		Lus10013438 [exp]	6.6	0.9098
AT3G57930			unknown protein		Lus10031806 [exp]	9.8	0.8986
AT5G60970	TCP	TCP5	TEOSINTE BRANCHED 1, cycloidea...		Lus10017856 [exp]	11.0	0.9088
AT3G02150	TCP	TFPD, PTF1, TCP...	TEOSINTE BRANCHED1, CYCLOIDEA ...		Lus10032984 [exp]	11.3	0.8833
AT5G38260			Protein kinase superfamily pro...		Lus10028669 [exp]	16.2	0.8294
AT4G15620			Uncharacterised protein family...		Lus10041528 [exp]	17.1	0.8986
AT1G13290	C2H2ZnF	WIP6, DOT5	WIP domain protein 6, DEFECTIV...		Lus10021700 [exp]	18.0	0.8865

Compare expression of checked genes

Lus10037311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.