Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51590 840 / 0 MNS1, MANIB ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) AT3G21160 823 / 0 MNS2, MANIA ALPHA-MANNOSIDASE IA, alpha-mannosidase 2 (.1) AT1G30000 342 / 8e-110 MNS3 alpha-mannosidase 3 (.1) AT1G27520 197 / 7e-56 Glycosyl hydrolase family 47 protein (.1) AT5G43710 191 / 3e-53 Glycosyl hydrolase family 47 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035727 [exp] 1116 / 0 AT1G51590 877 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10034820 [exp] 1010 / 0 AT1G51590 887 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10033368 [exp] 860 / 0 AT1G51590 747 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10042830 [exp] 342 / 6e-110 AT1G30000 846 / 0.0 alpha-mannosidase 3 (.1) Lus10028127 [exp] 231 / 5e-70 AT1G30000 622 / 0.0 alpha-mannosidase 3 (.1) Lus10042143 [exp] 196 / 2e-55 AT1G27520 886 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10021888 [exp] 189 / 2e-52 AT5G43710 853 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10041170 [exp] 187 / 3e-51 AT5G43710 885 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10004233 [exp] 71 / 1e-12 AT1G27520 515 / 0.0 Glycosyl hydrolase family 47 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G007500 [exp] 926 / 0 AT1G51590 885 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Potri.018G141100 [exp] 832 / 0 AT1G51590 813 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Potri.004G132300 [exp] 349 / 1e-112 AT1G30000 934 / 0.0 alpha-mannosidase 3 (.1) Potri.015G071400 [exp] 197 / 1e-55 AT1G27520 931 / 0.0 Glycosyl hydrolase family 47 protein (.1) Potri.008G160900 [exp] 191 / 3e-53 AT5G43710 908 / 0.0 Glycosyl hydrolase family 47 protein (.1) Potri.012G076600 [exp] 142 / 9e-36 AT1G27520 657 / 0.0 Glycosyl hydrolase family 47 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF01532 [flax] [poplar] Glyco_hydro_47 Glycosyl hydrolase family 47
Representative CDS sequence Show only first row Show all	>Lus10037312 pacid=23152405 polypeptide=Lus10037312 locus=Lus10037312.g ID=Lus10037312.BGIv1.0 annot-version=v1.0 ATGGGGAGGAGCAGCAGATCTTCAGCTTCTTCGTCGTCGTCGCCTTCCTCCTCGAAATGGAGGTATTGCAATCCTTCTTATTACCTGAAGCGTCCCAAGC GATTGGCTATGCTCTTCCTCGCGTTTGTTTGCGCTACCATGTTCGTCTGGGATCGCCAGACTCTCGTTCGGGAACACGAGGTGGAAGTTGTGAAATTATA TGAAGAAGTGAACCAGTTAAAAACGATACTAGAAGAGTTAAAGATTACTCAAGGTGATGAAGTCGGTTTAGTGCGTAAATCCTCCAAAGTCTCCCAGAAG GCTCCTCCAGAGGACCTAGTTGATATTCATCGAAGAGAGAAAGTAAGAGAAGCAATGATTCATGCTTGGAGTTCATATGAAAAATATGCATGGGGTAATG ATGAACTTCAGCCTCAAACAAAGAATGGCGTAGACAGCTTTGGTGGTCTTGGAGCAACACTAATAGACGCTCTTGATACACTATATATAATGGGTCTGGA TGAGCAGTTCCAGAGAGCAAAAGAGTGGGTTGCAAATTCGTTGGATTTCGACAAGGATTATGATGCGAGTGTATTTGAGACAACCATAAGAGTAGTAGGT GGTCTACTCAGTGCATATGATCTTTCCGGGGACAAAGTTTTCATTGAAAAAGCAAAGGACATTGCTGACAGGTTGCTGCCTGCATGGGATACACCTACTG GCATACCTTATAACATCATCAATTTGGAAAATGGAAATCCTCATAACCCTGGTTGGACTGGTGGATCCAGTATTCTTGCAGATTCTGGTACTGAGCAGCT TGAATTTTTCGCTCTCTCACAAAGGACGGGTGACCCAAAGTATCAACAAAAGGCTGAAAAGGTTATCCTGGAGCTCAATAAAACCTTCCCTGCTGACGGG CTTCTTCCAATCTATATAAGTCCCGACACTGGAATTGCTTCAAGTTCCACGATAACTTTTGGTGCGATGGGTGACAGCTTTTATGAGTATCTACTCAAAG TCTGGATTCAAGGAAATAGAACTCCAGCTGTGAAACTTTACAGAGACATGTGGGAGAAATCAATGAAGGGTTTGCTAAGTTTAATTAGACGAAGTTCACC TTCATCTTTCACATACATTTGTGAAAAAAGTGGTGATTGGTTGACAGACAAGATGGATGAATTAGCATGCTTTGCTCCAGGGATGCTGGCCTTGGGATCA TCTGGTTATGAGCAAGCTGAATCTGAGAGAATTCTGTCACTTGCTGAAGAGCTTGCTTGGACGTGTTACAATTTCTACCAATCAACACCAACAAAATTGG CTGGAGAGAACTATTTTTTCCGATCTGGACAGGATATGAGTGTCGGCACATCTTGGAACATACTGAGGCCTGAAACTGTGGAGTCACTCTTTTACCTCTG GCGTTTAACGGGCAACAAAACATACCAGGAGTGGGGTTGGAACATATTCCAAGCATTTGAAAAGAACTCGTGTGTTGAGGGTGGATACGTTGGACTGAAG GATGTGAATACCGGCATAAAAGACAACATGATGCAAAGCTTCTTCCTTGCCGAGACCCTCAAGTATCTGTACCTCCTATTCTCGCCGACATCTGTCATCT CATTAGACGAATGGGTTTTCAACACGGAAGCTCACCCGTTAAGAATCACGAACCTCCAGGACGGAGAAACTAATGGATACACAGACGACAAACTAACTAG GTCTCGTGGCAGGAAAGAAGGGCAATGGTGA
AA sequence Show only first row Show all	>Lus10037312 pacid=23152405 polypeptide=Lus10037312 locus=Lus10037312.g ID=Lus10037312.BGIv1.0 annot-version=v1.0 MGRSSRSSASSSSSPSSSKWRYCNPSYYLKRPKRLAMLFLAFVCATMFVWDRQTLVREHEVEVVKLYEEVNQLKTILEELKITQGDEVGLVRKSSKVSQK APPEDLVDIHRREKVREAMIHAWSSYEKYAWGNDELQPQTKNGVDSFGGLGATLIDALDTLYIMGLDEQFQRAKEWVANSLDFDKDYDASVFETTIRVVG GLLSAYDLSGDKVFIEKAKDIADRLLPAWDTPTGIPYNIINLENGNPHNPGWTGGSSILADSGTEQLEFFALSQRTGDPKYQQKAEKVILELNKTFPADG LLPIYISPDTGIASSSTITFGAMGDSFYEYLLKVWIQGNRTPAVKLYRDMWEKSMKGLLSLIRRSSPSSFTYICEKSGDWLTDKMDELACFAPGMLALGS SGYEQAESERILSLAEELAWTCYNFYQSTPTKLAGENYFFRSGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYQEWGWNIFQAFEKNSCVEGGYVGLK DVNTGIKDNMMQSFFLAETLKYLYLLFSPTSVISLDEWVFNTEAHPLRITNLQDGETNGYTDDKLTRSRGRKEGQW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10037312 [exp]	0	1
AT4G24840			unknown protein		Lus10024203 [exp]	2.4	0.7502
AT1G17450			B-block binding subunit of TFI...		Lus10015660 [exp]	13.3	0.6830
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10035727 [exp]	13.9	0.6974
					Lus10039535 [exp]	17.9	0.6451
AT2G04860			Tetratricopeptide repeat (TPR)...		Lus10032904 [exp]	32.7	0.6742
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10020453 [exp]	33.2	0.6489
AT2G47900	TUB	AtTLP3	tubby like protein 3 (.1.2.3)		Lus10033977 [exp]	44.3	0.6697
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10026574 [exp]	49.2	0.6561
					Lus10008296 [exp]	49.6	0.6370
AT2G27090			Protein of unknown function (D...		Lus10025550 [exp]	53.5	0.6380

Compare expression of checked genes

Lus10037312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.