Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01470 328 / 1e-109 ATSEC12, STL2P SEC12P-like 2 protein (.1) AT5G50650 320 / 1e-106 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50550 320 / 1e-106 Transducin/WD40 repeat-like superfamily protein (.1) AT3G52190 150 / 7e-41 AtPHF1, PHF1 phosphate transporter traffic facilitator1 (.1) AT1G36070 46 / 4e-05 Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G04940 46 / 5e-05 transducin family protein / WD-40 repeat family protein (.1) AT1G15440 46 / 5e-05 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT1G73720 45 / 8e-05 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT2G37160 45 / 0.0001 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G78070 44 / 0.0002 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035728 [exp] 785 / 0 AT2G01470 332 / 3e-111 SEC12P-like 2 protein (.1) Lus10017451 [exp] 151 / 2e-41 AT3G52190 516 / 0.0 phosphate transporter traffic facilitator1 (.1) Lus10028830 [exp] 149 / 9e-41 AT3G52190 518 / 0.0 phosphate transporter traffic facilitator1 (.1) Lus10037923 [exp] 147 / 6e-40 AT3G52190 497 / 2e-176 phosphate transporter traffic facilitator1 (.1) Lus10038651 [exp] 140 / 3e-37 AT3G52190 484 / 2e-171 phosphate transporter traffic facilitator1 (.1) Lus10031629 [exp] 53 / 2e-07 AT1G71840 488 / 2e-172 transducin family protein / WD-40 repeat family protein (.1) Lus10034114 [exp] 54 / 3e-07 AT1G15440 1318 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Lus10043473 [exp] 51 / 2e-06 AT1G15440 1058 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Lus10038425 [exp] 50 / 2e-06 AT1G73720 956 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G130300 [exp] 474 / 7e-167 AT2G01470 355 / 2e-120 SEC12P-like 2 protein (.1) Potri.010G111800 [exp] 466 / 9e-164 AT2G01470 346 / 7e-117 SEC12P-like 2 protein (.1) Potri.010G232400 [exp] 162 / 2e-45 AT3G52190 511 / 0.0 phosphate transporter traffic facilitator1 (.1) Potri.008G029200 [exp] 161 / 2e-45 AT3G52190 489 / 2e-173 phosphate transporter traffic facilitator1 (.1) Potri.003G060500 [exp] 55 / 8e-08 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.011G156900 [exp] 53 / 2e-07 AT1G73720 948 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Potri.001G173500 [exp] 53 / 3e-07 AT1G15440 1342 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.012G065200 [exp] 46 / 5e-05 AT3G42660 1107 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.006G078900 [exp] 45 / 0.0001 AT4G04940 1394 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.002G094100 [exp] 44 / 0.0002 AT1G78070 655 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10037313 pacid=23152577 polypeptide=Lus10037313 locus=Lus10037313.g ID=Lus10037313.BGIv1.0 annot-version=v1.0 ATGGCCAAAGGTGAGGACCTGGATTCACCGGCGACCCAGAAATATGGCATCCCTTTCTATTCCGCTGCTTGGATTCCATGCAAGGAGCTGAAATCCAAGC TCCAGCCTAAGGAGGAAGGTCGATCTGAAGACGATCAGGAAGATTCTATTAAGGACTCTGCCGCTGCCACCACATCTGAGAAAAATGAAGACTCCGTGAA GGAACCAGAAACGCAGAAGAGTAATGGACCTGATCCTGCGTCGAAATATTATGTGGTCTTGGCGGGTGGTGGTGGTGAAGGCCGAAGTGGTATAGCGAAT GCAATTGTCCTTGCTCATTTCGATCTCGCTTCTAGTTCTCTGTTGCCGCAGCCCGTAACTAAACATGTTCTTGGTTCGGAATTACCTTATAGAATGGCTG TTCACCCAGGGGGTGATGGAATAATATGTGCGATGCAAAACAGTTGCAGGTTCTTTGAGTGGGATGAGATCATGGAGAATGGAAGCAGCAAACTTGATGT TAAAACATCTGAGAAAGCCCTAAACCAGTTACAAGATGTCGGACAACAATTAGCATTGGCTTACGACACTGACGGTTCCACTCTGGCAGTTGGTGGTGAG GAGGGCGACCTGAGGATTTTTAAATGGCCAAGCATGAAAGTGGTTCTGAATGAGACTCAAGCACATTCTTCCGTTAAGGACTTGTGTTTCAGCCCTGATG GCAAGTTTCTCGTCTCTCTTGGGGGTCGTGGTCCTGGTAGGGTGTGGGATGTACCTTCAGCAAAAGTTATAGCTTCATTGTCAAATACAAGTGATGAGGT GTTTGCCTCTTGCAGGTTTGTGCAAAGTAGGGATAATTCTCTGGTTCTGTATATTGCTGCCATAACAGGAAGAGGTGCAAGTATAGTGACGTGGAGCACA AGCTCTTGGAAACGATTACGCTCTAAGCATGTAGTTGGGGATTCCATTTCTTCCTTCAACGTCTCACCCGATGGAAGGCTCCTTGCTATGGGTACAGCTC GAGGAGATGTGGTGGTTGTAGATTCATCCAAGATGGGGGTTCAGATGGTTGTGAAAAAGGCACATCTCGGCTTTGTAACAGCATTGGCGTTCTCACATGA CTCAAAGGCATTGGCATCGGCTTCTATGGATTCAAGCGCACGGGTGACGTTGATAAAGGAGAAGAAAAGTGGTACGTACAACGATGGTGTTAAACCAGGT GGAGGAAATTGGTGGGTTATAGTGATGGTGATTTTACTAGCAATAATTGCATATTTCCTGAAGAAACAGGGCCTTCTTCCTGACATCATCGACTAG
AA sequence Show only first row Show all	>Lus10037313 pacid=23152577 polypeptide=Lus10037313 locus=Lus10037313.g ID=Lus10037313.BGIv1.0 annot-version=v1.0 MAKGEDLDSPATQKYGIPFYSAAWIPCKELKSKLQPKEEGRSEDDQEDSIKDSAAATTSEKNEDSVKEPETQKSNGPDPASKYYVVLAGGGGEGRSGIAN AIVLAHFDLASSSLLPQPVTKHVLGSELPYRMAVHPGGDGIICAMQNSCRFFEWDEIMENGSSKLDVKTSEKALNQLQDVGQQLALAYDTDGSTLAVGGE EGDLRIFKWPSMKVVLNETQAHSSVKDLCFSPDGKFLVSLGGRGPGRVWDVPSAKVIASLSNTSDEVFASCRFVQSRDNSLVLYIAAITGRGASIVTWST SSWKRLRSKHVVGDSISSFNVSPDGRLLAMGTARGDVVVVDSSKMGVQMVVKKAHLGFVTALAFSHDSKALASASMDSSARVTLIKEKKSGTYNDGVKPG GGNWWVIVMVILLAIIAYFLKKQGLLPDIID

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01470		ATSEC12, STL2P	SEC12P-like 2 protein (.1)		Lus10037313 [exp]	0	1
AT3G60800			DHHC-type zinc finger family p...		Lus10009291 [exp]	1.7	0.8078
AT3G47700		MAG2	maigo2, RINT-1 / TIP-1 family ...		Lus10024240 [exp]	2.8	0.8162
AT3G10330			Cyclin-like family protein (.1...		Lus10035440 [exp]	3.7	0.8101
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10037143 [exp]	9.8	0.8009
AT4G17080			Histone H3 K4-specific methylt...		Lus10028158 [exp]	13.7	0.7809
AT1G63220			Calcium-dependent lipid-bindin...		Lus10002235 [exp]	15.5	0.7807
AT2G01470		ATSEC12, STL2P	SEC12P-like 2 protein (.1)		Lus10035728 [exp]	19.6	0.7938
AT1G04130		TPR2, AtTPR2	tetratricopeptide repeat 2, Te...		Lus10025945 [exp]	20.0	0.7398
AT1G56230			Protein of unknown function (D...		Lus10029871 [exp]	21.6	0.7733
AT5G16890			Exostosin family protein (.1)		Lus10013787 [exp]	25.7	0.6880

Compare expression of checked genes

Lus10037313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.