Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64650 274 / 6e-96 Ribosomal protein L17 family protein (.1) AT5G09770 274 / 6e-96 Ribosomal protein L17 family protein (.1) AT3G54210 114 / 5e-32 Ribosomal protein L17 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035729 [exp] 331 / 2e-118 AT5G09770 271 / 6e-95 Ribosomal protein L17 family protein (.1) Lus10007002 [exp] 114 / 3e-32 AT3G54210 244 / 2e-82 Ribosomal protein L17 family protein (.1) Lus10000382 [exp] 115 / 4e-32 AT3G54210 245 / 3e-82 Ribosomal protein L17 family protein (.1) Lus10006999 [exp] 114 / 2e-31 AT3G54210 248 / 1e-82 Ribosomal protein L17 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G107100 [exp] 287 / 3e-101 AT5G64650 258 / 1e-89 Ribosomal protein L17 family protein (.1) Potri.005G061700 [exp] 277 / 6e-97 AT5G64650 257 / 4e-89 Ribosomal protein L17 family protein (.1) Potri.006G113500 [exp] 114 / 3e-32 AT3G54210 253 / 1e-85 Ribosomal protein L17 family protein (.1) Potri.016G143100 [exp] 114 / 8e-32 AT3G54210 258 / 7e-88 Ribosomal protein L17 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01196 [flax] [poplar] Ribosomal_L17 Ribosomal protein L17
Representative CDS sequence Show only first row Show all	>Lus10037314 pacid=23152252 polypeptide=Lus10037314 locus=Lus10037314.g ID=Lus10037314.BGIv1.0 annot-version=v1.0 ATGACGAAGTTCAGGAAGCTAAATCGGCCGGCGGCCCACCGTATGGCCATGTTCAGAACTATGGTTTCACAACTGGTGAAGCACGAGCGCATTGAAACCA CCGTTGCCAAGGCAAAAGAAATACGCAGGCTTGCTGATAATATGGTGCAGCTTGGCAAAGAGGGTACCCTTCATGCTGCAAGGCAAGCTGGTGCTTTCGT GAGAGGAGATGATGTCATTCACAAACTATTTACAGAGCTAGCATATCGATACAAGGACAGAGCTGGTGGTTACACAAGGATGCTAAGAACACGCATTAGA GTCGGTGACGCTGCACCAATGGCCTACATTGAGTTTATCGATAGAGAAAATGAACTGAGACAATCCAAACCACCAATCCCTCAGGCGCCTCAGAGAGCTG CTTTGGATCCATGGATGAGATCCCAGCTCACCAGGAACTTTGCACCACCCAAGGAGGAAAAGCAATCTGGATGTGATTCCGACATATGA
AA sequence Show only first row Show all	>Lus10037314 pacid=23152252 polypeptide=Lus10037314 locus=Lus10037314.g ID=Lus10037314.BGIv1.0 annot-version=v1.0 MTKFRKLNRPAAHRMAMFRTMVSQLVKHERIETTVAKAKEIRRLADNMVQLGKEGTLHAARQAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRMLRTRIR VGDAAPMAYIEFIDRENELRQSKPPIPQAPQRAALDPWMRSQLTRNFAPPKEEKQSGCDSDI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09770			Ribosomal protein L17 family p...		Lus10037314 [exp]	0	1
AT5G09770			Ribosomal protein L17 family p...		Lus10035729 [exp]	1.4	0.9082
AT4G39200			Ribosomal protein S25 family p...		Lus10023552 [exp]	17.2	0.9048
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10010763 [exp]	19.1	0.9054
AT5G19300			unknown protein		Lus10034063 [exp]	21.4	0.8907
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10034685 [exp]	21.9	0.9012
AT3G56070		ROC2	rotamase cyclophilin 2 (.1.2)		Lus10022012 [exp]	22.2	0.8779
AT4G35850			Pentatricopeptide repeat (PPR)...		Lus10022296 [exp]	26.1	0.8820
AT5G55130		SIR1, CNX5	SIRTINOL RESISTANT 1, "co-fact...		Lus10022510 [exp]	35.2	0.8910
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Lus10009338 [exp]	37.9	0.8926
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Lus10025686 [exp]	40.4	0.8808

Compare expression of checked genes

Lus10037314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.