Plant FIBer expression Database

Lus10037315 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G27870 122 / 3e-29 Vacuolar iron transporter (VIT) family protein (.1)
AT5G24290 116 / 2e-27 Vacuolar iron transporter (VIT) family protein (.1), Vacuolar iron transporter (VIT) family protein (.2)
AT4G27860 95 / 2e-20 vacuolar iron transporter (VIT) family protein (.1), vacuolar iron transporter (VIT) family protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035731
[exp]
832 / 0 AT4G27870 136 / 2e-33 Vacuolar iron transporter (VIT) family protein (.1)
Lus10011838
[exp]
110 / 2e-25 AT4G27870 161 / 9e-42 Vacuolar iron transporter (VIT) family protein (.1)
Lus10022771
[exp]
107 / 1e-24 AT4G27870 155 / 4e-41 Vacuolar iron transporter (VIT) family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G004000
[exp]
162 / 4e-42 AT4G27870 126 / 1e-29 Vacuolar iron transporter (VIT) family protein (.1)
Potri.001G127900
[exp]
122 / 3e-29 AT4G27870 182 / 2e-49 Vacuolar iron transporter (VIT) family protein (.1)
PFAM info
Representative CDS sequence
>Lus10037315 pacid=23152422 polypeptide=Lus10037315 locus=Lus10037315.g ID=Lus10037315.BGIv1.0 annot-version=v1.0
ATGGGGGAAATCCAGTCCCAGTTGATGACTGCGGATCCTCCTGTTGTTACCTGTGCAATGGAGGACGATGATTCAGAATTGGTGACACTGAAGCTTCTGG
GACAGAGGAGTAGTCTCATACCTACTGTTCCAGCCTATCATCCGAACGGAAGCCACAGCGTCTACGGCGGTGCGCCAGTTACTGTAAGCTTCCACGGTAA
TGATTATTCAGAAGTTCCAACTCCGAAAAACACCGGAGCTGCCGTTAAAGAGAGCGTTGCTGATACATTGGACTATAGCGTTTACTCGGACCAACGCCGT
CGGAAATGGAAGTGCCGTCACTGCAACTGGACTGACCATTCGAATTATGGCTTTGGTAATCGTCGGAGTTGGAAGTGCCGCCATTGCAATTGGAACTCCT
CCAACCCAAGCCGGCTGGGATTTGGAACTCTAGTGAATCGCATTGCTGCAGGTACTGAGTCAGTCGACGGAGGCAAGAATGGTTTTCAATTCAAAGGGCT
GAACCAACAACATGGAAGGCTCTCTGCCTCAAGCCTAACATCTCCGAATGGCTCGTGGGATCAACAACCAACGGTGAGATGGAGTTACAGAAATGGAGGG
TGGGAAGCGATGGAACAGACAAAAGAGGGTGTTACACAATTAGGTGTGGAGTCTGTGATAGAGAAGCTTGAACTGTATTGTCCTGACTGCAGTTCTTGCA
TTACGAAGCGGGTTATCTTGAATACAAGGAAACAAAATACTCCAAACGGACACCGCAAGCCGGAGGAAGTAGAAAACAAGTACGAGGCTGCTACAAATTG
TCCCAAGTCCGATGCTGAATCCAGCCGTCCACCCCTTGAGCAAGAGAAAGACATTGTTGGTGGTTTCCCGGACAGTAGTTTCAGACCAGCAGTTAATGAG
GGCGAGCCGGATTTGTTCCGATGCTTCTCATGCTTCAGATTCTTCATTCCCCAAGAACTACAAGTTGATGATCCAGTACCGGCTACATCGACTGTGCCTC
TGCTAGAACCAGCAACTGAAGGCCTGGTACAGGTTCCAAGAGTAACAATACTAGCGAATCAGACGCATATGGCTGAACAGAGAGGTGGAAGTGGAGGTGG
TGAGAGCTACAAGTGGGAAATCTTGAGAAGTGTAGTCTTTGGCGGGTTGATCGAATCAATTACAAGTCTCGGTGTCGTAACTTCTGCTGCAGGCGCGGGT
GCCGGAACTTGTAAGTGGCAAGCTGATATTTCATTGAATGAACAAGAGGAAGACCGCTACCAGAAAACACTCGGCAAGAGGGAGAATTTCGCTCTTCATT
TCACTACGGCAGTACTAGCGTTTCTGGTATGTGGGTTGCTGCCTACTGTAACATATGGGTTCACATTTCAAACGGAAAGCGGCAACATCAACAAAGAAGA
GAAGCTAATAGCAGCAGGAGGTGTTTCTCTAGTGTGCATCATTCTACTTGCAATAGGAAAAGCTCACATTCAAAAGAAGCAGCAGCAGCAGCAGCAACTT
AAAGGAGGATACGCGGGAACTGTAATTTACTTCTTCAGCATCTGGATGGCTACATCAGGTACATGCTACTTAGTCGGAGATCTAATTAAGAAACTAATTA
TCACCACGCCCATGTGA
AA sequence
>Lus10037315 pacid=23152422 polypeptide=Lus10037315 locus=Lus10037315.g ID=Lus10037315.BGIv1.0 annot-version=v1.0
MGEIQSQLMTADPPVVTCAMEDDDSELVTLKLLGQRSSLIPTVPAYHPNGSHSVYGGAPVTVSFHGNDYSEVPTPKNTGAAVKESVADTLDYSVYSDQRR
RKWKCRHCNWTDHSNYGFGNRRSWKCRHCNWNSSNPSRLGFGTLVNRIAAGTESVDGGKNGFQFKGLNQQHGRLSASSLTSPNGSWDQQPTVRWSYRNGG
WEAMEQTKEGVTQLGVESVIEKLELYCPDCSSCITKRVILNTRKQNTPNGHRKPEEVENKYEAATNCPKSDAESSRPPLEQEKDIVGGFPDSSFRPAVNE
GEPDLFRCFSCFRFFIPQELQVDDPVPATSTVPLLEPATEGLVQVPRVTILANQTHMAEQRGGSGGGESYKWEILRSVVFGGLIESITSLGVVTSAAGAG
AGTCKWQADISLNEQEEDRYQKTLGKRENFALHFTTAVLAFLVCGLLPTVTYGFTFQTESGNINKEEKLIAAGGVSLVCIILLAIGKAHIQKKQQQQQQL
KGGYAGTVIYFFSIWMATSGTCYLVGDLIKKLIITTPM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G27870 Vacuolar iron transporter (VIT... Lus10037315
[exp]
0 1
AT2G26710 CYP72B1, CYP734... PHYB ACTIVATION TAGGED SUPPRES... Lus10036817
[exp]
4.8 0.9397
AT4G14305 Peroxisomal membrane 22 kDa (M... Lus10011798
[exp]
5.3 0.9201
AT1G32640 bHLH JIN1, JAI1, ZBF... JASMONATE INSENSITIVE 1, Basic... Lus10005999
[exp]
5.5 0.9244
AT1G64820 MATE efflux family protein (.1... Lus10009140
[exp]
10.1 0.9267
AT1G09440 Protein kinase superfamily pro... Lus10030863
[exp]
10.5 0.9248
AT5G14930 GENE101, SAG101 senescence-associated gene 101... Lus10009502
[exp]
11.6 0.9043
AT1G70830 MLP28 MLP-like protein 28 (.1.2.3.4.... Lus10020498
[exp]
12.6 0.9275
AT3G26210 CYP71B23 "cytochrome P450, family 71, s... Lus10018262
[exp]
15.2 0.9249
AT4G13010 Oxidoreductase, zinc-binding d... Lus10038205
[exp]
17.9 0.9135
AT1G54730 Major facilitator superfamily ... Lus10002258
[exp]
18.8 0.9138

Lus10037315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.