Plant FIBer expression Database

Lus10037316 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G78780 337 / 5e-118 pathogenesis-related family protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035732
[exp]
292 / 8e-101 AT1G78780 249 / 2e-85 pathogenesis-related family protein (.1.2.3.4)
Lus10039018
[exp]
275 / 4e-93 AT1G78780 301 / 6e-104 pathogenesis-related family protein (.1.2.3.4)
Lus10018919
[exp]
226 / 7e-74 AT1G78780 239 / 1e-79 pathogenesis-related family protein (.1.2.3.4)
Lus10029763
[exp]
218 / 6e-71 AT1G78780 228 / 3e-75 pathogenesis-related family protein (.1.2.3.4)
Lus10027315
[exp]
150 / 1e-45 AT1G78780 171 / 3e-55 pathogenesis-related family protein (.1.2.3.4)
Lus10042792
[exp]
114 / 1e-31 AT1G78780 115 / 1e-33 pathogenesis-related family protein (.1.2.3.4)
Lus10028620
[exp]
56 / 2e-10 AT1G78780 67 / 1e-15 pathogenesis-related family protein (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G108900
[exp]
363 / 6e-128 AT1G78780 365 / 4e-129 pathogenesis-related family protein (.1.2.3.4)
Potri.001G389800
[exp]
357 / 1e-125 AT1G78780 361 / 9e-128 pathogenesis-related family protein (.1.2.3.4)
Potri.001G389400
[exp]
339 / 2e-118 AT1G78780 352 / 4e-124 pathogenesis-related family protein (.1.2.3.4)
Potri.005G188400
[exp]
241 / 4e-80 AT1G78780 249 / 1e-83 pathogenesis-related family protein (.1.2.3.4)
Potri.005G188300
[exp]
240 / 8e-80 AT1G78780 251 / 2e-84 pathogenesis-related family protein (.1.2.3.4)
PFAM info
Representative CDS sequence
>Lus10037316 pacid=23152444 polypeptide=Lus10037316 locus=Lus10037316.g ID=Lus10037316.BGIv1.0 annot-version=v1.0
ATGGGATTTGGAGAAGAAAGTTGTAATGATAATGGGGATCGTGTGAGAGTTTCAGTTTCAGCAGCAGGGGATAAATACCGTACACTGTTGAAAGAAGAAG
CAGATAATCCCAACATTCTATGGAGACACGGCGGGCCTCCCATCTTTGATGCCGTTAACAAGCTCTTCGAAGAAACCCGTACTAAGGTGTGGGAACAAGG
CTCTCTTGAGGAGGCAGTCCAAAATGCAGTCAAGACGTGGGAGATGGAGCTCTCTCACAAGACTCGCTTGCTCGACTTCCGCACCATCAACCCTCACAAG
TTCCACCTCATCGTTAATGGGAGGGAAGGGCTGAGTGGGGAGGAGACGCTAAGACAAGGGAGCTACAACGCACTGCTGAAGAACACTCTGCCCGATCAGT
TTCGGTACTACAAAACAGAAGAGAGTTTCGAGACTTCCCATGATGCGTTTCGATCAGCCTTCCCTCGAGGGTTTGTGTGGGAGGTGATCAATGTCTACTC
TGGTCCTCCAGTGATAACCTACAAGTTCAGACACTGGGGCTTCTTTGAAGGACCTTTCAAAGGCCATGCTCCCACTGGGGAGATGGTTCAGTTCTATGGA
ATCTGGGTAATGACGGTTGATGAATCAATGAGGGCAGAAGAAGTGGAGATCTACTATGACCCTGCAGAGCTGTTTGGAGGCTTACTCAAAGGAACACCAG
ATTCCAAAATGCAAACACAAGATCAACAAGACCAAAACTCCCATGAAGCTCTTGCTCGACATTCTTGTCCATTTTCCAACCAACACTCTTCTTCATGTTA
G
AA sequence
>Lus10037316 pacid=23152444 polypeptide=Lus10037316 locus=Lus10037316.g ID=Lus10037316.BGIv1.0 annot-version=v1.0
MGFGEESCNDNGDRVRVSVSAAGDKYRTLLKEEADNPNILWRHGGPPIFDAVNKLFEETRTKVWEQGSLEEAVQNAVKTWEMELSHKTRLLDFRTINPHK
FHLIVNGREGLSGEETLRQGSYNALLKNTLPDQFRYYKTEESFETSHDAFRSAFPRGFVWEVINVYSGPPVITYKFRHWGFFEGPFKGHAPTGEMVQFYG
IWVMTVDESMRAEEVEIYYDPAELFGGLLKGTPDSKMQTQDQQDQNSHEALARHSCPFSNQHSSSC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G78780 pathogenesis-related family pr... Lus10037316
[exp]
0 1
AT3G58170 ATBET11, ATBS14... ARABIDOPSIS THALIANA BET1P/SFT... Lus10009926
[exp]
9.8 0.6251
AT4G33920 Protein phosphatase 2C family ... Lus10000700
[exp]
14.1 0.6158
AT5G22460 alpha/beta-Hydrolases superfam... Lus10004882
[exp]
17.3 0.6158
AT1G66950 ABCG39, PDR11, ... ATP-binding cassette G39, plei... Lus10006277
[exp]
20.0 0.6158
AT2G29670 Tetratricopeptide repeat (TPR)... Lus10025981
[exp]
22.4 0.6158
AT5G51740 Peptidase family M48 family pr... Lus10032437
[exp]
24.5 0.6158
AT4G20060 EMB1895 EMBRYO DEFECTIVE 1895, ARM rep... Lus10038371
[exp]
26.5 0.6158
AT3G06920 Tetratricopeptide repeat (TPR)... Lus10038657
[exp]
28.3 0.6158
AT1G01450 Protein kinase superfamily pro... Lus10041113
[exp]
30.0 0.6158
AT1G29150 RPN6, ATS9 REGULATORY PARTICLE NON-ATPASE... Lus10029167
[exp]
30.0 0.5794

Lus10037316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.