Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16840 131 / 3e-39 unknown protein AT1G78890 116 / 2e-33 unknown protein AT2G19180 85 / 5e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035733 [exp] 273 / 4e-95 AT1G16840 130 / 9e-39 unknown protein Lus10034821 [exp] 182 / 3e-59 AT1G16840 140 / 2e-43 unknown protein Lus10033369 [exp] 161 / 2e-51 AT1G16840 119 / 3e-35 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G005900 [exp] 160 / 7e-51 AT1G16840 142 / 8e-44 unknown protein Potri.010G252800 [exp] 160 / 4e-50 AT1G16840 146 / 8e-45 unknown protein Potri.018G142900 [exp] 81 / 8e-19 AT2G19180 80 / 3e-18 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037317 pacid=23152558 polypeptide=Lus10037317 locus=Lus10037317.g ID=Lus10037317.BGIv1.0 annot-version=v1.0 ATGGCGCGCTCCTTGTTCTCCTCCCGAGCTTACCTAAACCTTGCTGCACCAACCTCCACTTCTTCCTTCTCCGCCTCCTTCCGCTGCCTGGCCGTCCGCT CCAACTCCAACCTTCCAAACAATCCCGCTGTCGACCCCGCCGATGAATGCTCCACCGACCCTCTCATCAGAAAGCTCGAGGACGCCATCCACCGTATCAT CGTCCGTCGAGCCGCCCCTGATTGGCTTCCTTTCGTTCCTGGCTCTTCCTATTGGGTCCCTTCCCCTAGATCTAACGCTGGTTCCTTCGGTATTGCCCAC CTCGTCGAGAGGCTCTCTAATCCTATGACTCACGAGGAGGCCCTCTCCGTCACCACCGTCAGAGGCTGGCCTTCGTCTGATTATTTCATTAAAGGTGCTG GCCTAGACTCTGCGGATGCAGATAGAAATACAGAGGAATTGGAGAAGGATTCAACTTCAGTTGAAGTTGAAATTGAAGAGACGTCCAGTCATGCCCCTAA ATCTGACACTGAGGAAGGATAA
AA sequence Show only first row Show all	>Lus10037317 pacid=23152558 polypeptide=Lus10037317 locus=Lus10037317.g ID=Lus10037317.BGIv1.0 annot-version=v1.0 MARSLFSSRAYLNLAAPTSTSSFSASFRCLAVRSNSNLPNNPAVDPADECSTDPLIRKLEDAIHRIIVRRAAPDWLPFVPGSSYWVPSPRSNAGSFGIAH LVERLSNPMTHEEALSVTTVRGWPSSDYFIKGAGLDSADADRNTEELEKDSTSVEVEIEETSSHAPKSDTEEG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16840			unknown protein		Lus10037317 [exp]	0	1
AT1G16840			unknown protein		Lus10035733 [exp]	1.4	0.8559
AT1G16840			unknown protein		Lus10034821 [exp]	3.7	0.7390
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10007936 [exp]	8.5	0.7582
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10014879 [exp]	10.2	0.7845
AT5G27280			Zim17-type zinc finger protein...		Lus10034555 [exp]	12.1	0.7650
AT5G27280			Zim17-type zinc finger protein...		Lus10021838 [exp]	14.1	0.7251
AT2G20920			Protein of unknown function (D...		Lus10025079 [exp]	16.6	0.7410
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Lus10029773 [exp]	18.8	0.7193
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10022671 [exp]	23.0	0.7494
AT1G16840			unknown protein		Lus10033369 [exp]	27.7	0.6981

Compare expression of checked genes

Lus10037317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.