Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47860 404 / 1e-141 CHL chloroplastic lipocalin (.1) AT5G58070 47 / 3e-06 ATTIL temperature-induced lipocalin (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035734 [exp] 550 / 0 AT3G47860 412 / 3e-142 chloroplastic lipocalin (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G420800 [exp] 425 / 5e-150 AT3G47860 428 / 8e-151 chloroplastic lipocalin (.1) Potri.018G110800 [exp] 45 / 2e-05 AT5G58070 310 / 3e-109 temperature-induced lipocalin (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0116 [flax] [poplar] Calycin PF08212 [flax] [poplar] Lipocalin_2 Lipocalin-like domain
Representative CDS sequence Show only first row Show all	>Lus10037318 pacid=23152304 polypeptide=Lus10037318 locus=Lus10037318.g ID=Lus10037318.BGIv1.0 annot-version=v1.0 ATGGTGGTATGTGTAATTCATCAATCACCTTCCTCACTTCTTGGGCTGCAATCTTCCAGAACCAGCAGCAGCCCTTCTTCTTCTTCATCTTCTCCTCTTC CTCCTCGTTCCTTCTTCCCCTGGCCTACAGGGAAATTGAGCTTCAGCCTTGCCGCCTCGTCATTACTACTCCTCTCTCAACCTTACCAGGTTTTAGCAGC AGATGTGAGTCCATCTCATCCTCACATGTACGAGATTGCTAATGCAGCAGCAGCTACCCTCCCGATTGAAGAGAGTTCTAATGGGATGTTGATGCAAATG AGAGGTATGACAGCAAAGAACTTTGACCCGGTTCGGTATTCCGGAAGGTGGTTTGAGGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAG ATTGTCACTGCACTCAGGGTGTTTACACTTTTGATATGGAAACGCCAGCCATTCAAGTGGACACATTCTGTGTACATGGAGGCCCTGATGGGTACATTAC AGGTATAAGAGGGAGAGTACAGTGCGTAGCAGACCAAGATCTGGAGAAAAACGAGACCGATCTTGAGAAACTGGAGATGATCAGAGAGAAATGCTACCTT CGTTTCCCAACACTTCCTTTCATCCCCAAGGAGCCTTATGATGTCATCGCCACTGATTATGACAACTTTGCTCTTGTTTCTGGTGCCAAAGACAAAAGCT TTGTCCAGATATACTCGAGGACGCCTGATCCAGGCGAGGCATTCATAGACAAGTACAAGGCGTACCTGGGGGATTTCGGGTATGATCCAACCAAAATCAA CAACACTCCACAGGACTGTGAAGTGAAGTCGACAGGTCAATTGTCTGCAATGATGGCGATGCCAGGGATGCAACAGGCTCTCACTAACCAGTTCCCTGAT CTCGCCTTAAACTCCTCCATTGAGTTTAACCCTTTTACCAGTGTGTTTGACACTTTGAAGAAGCTCCTTGAGCTCTACTTCAAGTAG
AA sequence Show only first row Show all	>Lus10037318 pacid=23152304 polypeptide=Lus10037318 locus=Lus10037318.g ID=Lus10037318.BGIv1.0 annot-version=v1.0 MVVCVIHQSPSSLLGLQSSRTSSSPSSSSSSPLPPRSFFPWPTGKLSFSLAASSLLLLSQPYQVLAADVSPSHPHMYEIANAAAATLPIEESSNGMLMQM RGMTAKNFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDMETPAIQVDTFCVHGGPDGYITGIRGRVQCVADQDLEKNETDLEKLEMIREKCYL RFPTLPFIPKEPYDVIATDYDNFALVSGAKDKSFVQIYSRTPDPGEAFIDKYKAYLGDFGYDPTKINNTPQDCEVKSTGQLSAMMAMPGMQQALTNQFPD LALNSSIEFNPFTSVFDTLKKLLELYFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47860		CHL	chloroplastic lipocalin (.1)		Lus10037318 [exp]	0	1
AT5G57170			Tautomerase/MIF superfamily pr...		Lus10034783 [exp]	2.8	0.8758
AT3G24530			AAA-type ATPase family protein...		Lus10034913 [exp]	3.9	0.8631
AT3G19800			Protein of unknown function (D...		Lus10040969 [exp]	4.1	0.9063
AT5G57170			Tautomerase/MIF superfamily pr...		Lus10033324 [exp]	7.7	0.8624
AT2G21530	FHA		SMAD/FHA domain-containing pro...		Lus10001966 [exp]	11.5	0.8906
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10012340 [exp]	11.6	0.8457
AT1G26930			Galactose oxidase/kelch repeat...		Lus10024239 [exp]	13.3	0.8452
AT5G66550			Maf-like protein (.1)		Lus10040204 [exp]	13.8	0.8380
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10012339 [exp]	13.9	0.8500
AT2G21860			violaxanthin de-epoxidase-rela...		Lus10002789 [exp]	14.4	0.8479

Compare expression of checked genes

Lus10037318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.