Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11690 521 / 1e-180 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62670 256 / 4e-77 RPF2 rna processing factor 2 (.1) AT5G39710 250 / 6e-74 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 245 / 4e-73 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 240 / 2e-71 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G17140 241 / 8e-70 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 233 / 2e-68 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 232 / 3e-68 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 234 / 5e-68 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 231 / 5e-68 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035735 [exp] 1044 / 0 AT4G11690 526 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10027914 [exp] 265 / 3e-79 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 266 / 4e-78 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 257 / 2e-76 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012037 [exp] 254 / 4e-76 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 247 / 3e-72 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 247 / 1e-71 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 245 / 4e-71 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 237 / 3e-68 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G131600 [exp] 671 / 0 AT4G11690 632 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G147700 [exp] 263 / 1e-79 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050400 [exp] 250 / 4e-75 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 246 / 1e-73 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 246 / 2e-73 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271200 [exp] 244 / 6e-73 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271400 [exp] 243 / 1e-72 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G105600 [exp] 246 / 2e-72 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050180 [exp] 238 / 2e-70 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050240 [exp] 237 / 2e-70 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10037319 pacid=23152386 polypeptide=Lus10037319 locus=Lus10037319.g ID=Lus10037319.BGIv1.0 annot-version=v1.0 ATGATGCAACAAACCCATTCCCCGGCGGCGATGTCAATTCTCCCCAAGATAGTGAAAATCCCGCCTTCCATGACTCTTTCAATCTTGGATTCCACTATTC TTCATGGCGTCAATCACAGCACCTACTCCATCTCCTTCGTCTTCCAACACCTTCTCCATTCAAACATGCTATCCGCTGCTCAGACGCTTCTTCAGCGAAT ACTCTCCAATCGAATCTCTTCCCCTTCCTTCTCCGTTTCGTCCCTTCTCCAAGGTCTAACAAACCCCACCAATTCAATTACTGCCCTTGTATATGAATCA ATCGTCAATGCTCATGTTCATTTGCAGTTAATAGACCAAGCTTTGTTCTATTTTCATCAAATGCTTGAAAGGGGTCTTTCTCCTCCTGGACCCCTAACAT TCAATAACCTGTTGCGCTGTCTTGTTAAGTCAGGCTGCTATGAAAAATCTTGGAACTTTTTCCAAGCCGCAAAGGGGAAGGTGAAAATGGACGTTTATAG TTTTGGGATAATGGTGAAAGGTTGTTGCGAGTCTGGTGATTTGGATAGAGGTTTTGAGATTCTGCTTCAGTTGGAGGAGGAGATGGATCTCTCTCCAAAT ATTGTTATATACACGACTTTGATTGATGGTTGCTGCAAAAAGGGTGATCTGGAAAGGGCGAGATTGCTCTTCAGTAAAATTGAAGAGCGGGTTAATGAGT ATACTTACACTGTTTTGATCAATGGATTCTTTAAGAAAGGAATGAGAAGAGATGGGTTTAAGTTATATGAGAAGATGCAGCTGAGTGGGATAACTCCCAA CCTTTATACTTACAATTGCGTGATTAATGAGTATTGCAGTGAAGGGAAAATAGATAGAGCTTCTTCTCTGTTTGATGAGATGTGTAATAAGAGAGGTATT GTCCCTAATGTGGTTTCTTACAATATTCTAATTGGGGGGATGTGTAAAAGTAGGAGACTTTGGGAAGCAGAGAAGATTGTGAACAGAATGAGAAGAGAAG GTGTTGTTCCGAATTTAATCACATATAACAATATGATAGGTGGATTTTGCAGCATCGGATTGTTCGATAAGGCTTTGTTTTGGTTAGAGGAAATGAAGTC GAATGCCATAATGCCGTCTTTAGTTACTTACAATGTTCTCATTCAGGGGTATTGTGATGCTGGTAGTCTAAGCAGTGTGACTGATTTGGTTAGGGAGATG GAAGCAAGAGGTCTTGCTCCTTCTGAAGTCACCTACACAATTTTAATTAATGGCTCCGTTAAGTTAGGGGATATGGAGAAAGCCTATCAACTTGTTTCCT CTATGAAGACTGTTGGTTTAGTACCCGACGCTTACACTTACGGAGTGTTGATAAATGGATTCTGCAAGAAGGGAAACATGAAAGAAGCTGCAAAGCTGTT TAGATCCATGGGAGGAATACGTCTGGCCGAGCCTAGTGATGTTATATACAACACGATGATCGGGGGATACTGCAACGAAGGTAGCTCGTATCGGGCCTTG AGGTTGGTTGAGGAAATGGAGGGTAAGGGATTAGTTCCAAATGTGGCTAGCTATAGTTCAACCGTTGGTGTCTTGTGCAAGGATGGGAAGTGGCAATACG CGGAGGTGTTATTGAATAGTATGATTAGTAAAGGATTGAAACCTACCGTCTCCATGTATAATAAGATGCATGAAGCTAGATGCGACGTAGATGTGAAAAT CTGA
AA sequence Show only first row Show all	>Lus10037319 pacid=23152386 polypeptide=Lus10037319 locus=Lus10037319.g ID=Lus10037319.BGIv1.0 annot-version=v1.0 MMQQTHSPAAMSILPKIVKIPPSMTLSILDSTILHGVNHSTYSISFVFQHLLHSNMLSAAQTLLQRILSNRISSPSFSVSSLLQGLTNPTNSITALVYES IVNAHVHLQLIDQALFYFHQMLERGLSPPGPLTFNNLLRCLVKSGCYEKSWNFFQAAKGKVKMDVYSFGIMVKGCCESGDLDRGFEILLQLEEEMDLSPN IVIYTTLIDGCCKKGDLERARLLFSKIEERVNEYTYTVLINGFFKKGMRRDGFKLYEKMQLSGITPNLYTYNCVINEYCSEGKIDRASSLFDEMCNKRGI VPNVVSYNILIGGMCKSRRLWEAEKIVNRMRREGVVPNLITYNNMIGGFCSIGLFDKALFWLEEMKSNAIMPSLVTYNVLIQGYCDAGSLSSVTDLVREM EARGLAPSEVTYTILINGSVKLGDMEKAYQLVSSMKTVGLVPDAYTYGVLINGFCKKGNMKEAAKLFRSMGGIRLAEPSDVIYNTMIGGYCNEGSSYRAL RLVEEMEGKGLVPNVASYSSTVGVLCKDGKWQYAEVLLNSMISKGLKPTVSMYNKMHEARCDVDVKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11690			Pentatricopeptide repeat (PPR-...		Lus10037319 [exp]	0	1
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10017150 [exp]	12.2	0.8728
AT1G17630			Pentatricopeptide repeat (PPR-...		Lus10003790 [exp]	22.4	0.8514
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Lus10010314 [exp]	23.9	0.8562
AT5G51690		ACS12	1-amino-cyclopropane-1-carboxy...		Lus10038899 [exp]	30.9	0.8243
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10039916 [exp]	32.3	0.7878
AT2G03050		SOLDAT10, EMB93	SINGLET OXYGEN-LINKED DEATH AC...		Lus10030451 [exp]	33.2	0.8237
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Lus10010313 [exp]	33.9	0.8511
AT4G28760			Protein of unknown function (D...		Lus10011912 [exp]	34.2	0.8485
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10014976 [exp]	38.3	0.8490
AT4G10920		KELP	transcriptional coactivator p1...		Lus10030245 [exp]	42.7	0.8160

Compare expression of checked genes

Lus10037319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.