Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78900 1186 / 0 VHA-A vacuolar ATP synthase subunit A (.1.2) AT5G08670 120 / 2e-28 ATP synthase alpha/beta family protein (.1) AT5G08690 119 / 2e-28 ATP synthase alpha/beta family protein (.1) AT5G08680 119 / 3e-28 ATP synthase alpha/beta family protein (.1) ATCG00480 105 / 9e-24 ATCG00480.1, ATPB ATP synthase subunit beta (.1) AT4G38510 97 / 5e-21 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) AT1G20260 95 / 2e-20 ATPase, V1 complex, subunit B protein (.1) AT1G76030 95 / 2e-20 ATPase, V1 complex, subunit B protein (.1) ATCG00120 83 / 2e-16 ATCG00120.1, ATPA ATP synthase subunit alpha (.1) ATMG01190 72 / 4e-13 ATMG01190.1, ATP1 ATP synthase subunit 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035737 [exp] 1257 / 0 AT1G78900 1214 / 0.0 vacuolar ATP synthase subunit A (.1.2) Lus10034836 [exp] 1247 / 0 AT1G78900 1210 / 0.0 vacuolar ATP synthase subunit A (.1.2) Lus10033382 [exp] 1236 / 0 AT1G78900 1199 / 0.0 vacuolar ATP synthase subunit A (.1.2) Lus10035264 [exp] 118 / 1e-27 AT5G08680 925 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10034631 [exp] 118 / 1e-27 AT5G08680 928 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10035263 [exp] 117 / 2e-27 AT5G08680 782 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10009173 [exp] 104 / 2e-23 ATCG00480 890 / 0.0 ATP synthase subunit beta (.1) Lus10024002 [exp] 99 / 8e-22 AT4G38510 954 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Lus10027827 [exp] 99 / 1e-21 AT4G38510 959 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G005000 [exp] 1210 / 0 AT1G78900 1184 / 0.0 vacuolar ATP synthase subunit A (.1.2) Potri.010G253500 [exp] 1203 / 0 AT1G78900 1184 / 0.0 vacuolar ATP synthase subunit A (.1.2) Potri.008G126600 [exp] 119 / 4e-28 AT5G08690 892 / 0.0 ATP synthase alpha/beta family protein (.1) Potri.010G116600 [exp] 116 / 4e-27 AT5G08690 871 / 0.0 ATP synthase alpha/beta family protein (.1) Potri.013G162800 [exp] 106 / 3e-24 ATCG00480 927 / 0.0 ATP synthase subunit beta (.1) Potri.009G137800 [exp] 97 / 5e-21 AT4G38510 966 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Potri.004G177500 [exp] 97 / 6e-21 AT4G38510 962 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Potri.013G138000 [exp] 77 / 1e-14 ATCG00120 933 / 0.0 ATP synthase subunit alpha (.1) Potri.007G062242 [exp] 74 / 2e-13 ATMG01190 924 / 0.0 ATP synthase subunit 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00006 [flax] [poplar] ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain CL0275 [flax] [poplar] HAS-barrel PF02874 [flax] [poplar] ATP-synt_ab_N ATP synthase alpha/beta family, beta-barrel domain CL0275 [flax] [poplar] PF00306 [flax] [poplar] ATP-synt_ab_C ATP synthase alpha/beta chain, C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10037321 pacid=23152489 polypeptide=Lus10037321 locus=Lus10037321.g ID=Lus10037321.BGIv1.0 annot-version=v1.0 ATGCCTTCGGTATACGGAGCTCGATTGACTACCTTCGAAGATTCGGAGAAGGAGAGCGAGTATGGCTACGTTCGCAAGGTATCTGGCCCTGTCGTTGTTG CGGATGGGATGGCTGGTGCTGCTATGTATGAACTAGTCCGTGTTGGCCATGACAATCTGATTGGAGAAATTATTCGATTGGAAGGGGATTCAGCCACAAT TCAAGTGTACGAGGAAACAGCTGGGTTGATGGTCAATGACCCTGTCCTACGTACACGCAAGCCTCTATCTGTGGAGCTGGGACCAGGAATATTGGGGAAT ATCTTTGATGGAATTCAGAGGCCTTTGAAAACTATTGCGAGGTTATCTGCTGATGTCTATATTCCTCGTGGTGTTTCTGTCCCTGCCCTCGACAAAGATA CGCTCTGGGAATTCCAGCCTAAAAAATTGGGCGAGGGAGATGTTTTGACTGGTGGAGACTTATATGCTACTGTTTTTGAGAACAGTCTTATGCAGCACCA TGTGGCCCTACCCCCTGATGCAATGGGAAAGATTACCTATATTGCACCTCCTGGTCAATATTCTCTGAAAGATACTGTGTTGGAGCTCGAGTTTCAGGGT GAGAAGAAGAAAATTACCATGCTTCAGACTTGGCCAGTTCGTACACCAAGACCTGTTGCATCCAAGCTTGCTGCTGATACTCCTCTGCTCACTGGACAGC GTGTTCTTGATGCTCTTTTCCCATCTGTTCTCGGTGGTACTTGTGCGATTCCTGGAGCATTTGGCTGTGGGAAAACTGTCATTAGTCAAGCTCTCTCTAA GTACTCTAATTCTGACACTGTTGTCTATGTTGGATGTGGGGAGAGAGGAAATGAAATGGCGGAGGTGCTTATGGATTTCCCACAATTGACAATGACACTG CCTGATGGCCGTGAGGAATCTGTCATGAAGCGAACAACACTTGTTGCCAATACATCAAACATGCCGGTCGCTGCACGAGAGGCTTCAATCTATACAGGAA TTACTATTGCTGAGTACTTCAGAGATATGGGCTACAATGTCAGCATGATGGCTGATTCAACATCTCGGTGGGCAGAAGCATTGCGTGAAATATCTGGCCG ATTGGCTGAAATGCCTGCAGATAGTGGATATCCAGCTTATTTGGCTGCCCGTTTGGCTTCATTTTATGAGCGTGCTGGTAAGGTCAAATGCCTTGGTGGT CCAGAGCGCAATGGTAGTGTTACAATTGTCGGTGCTGTTTCTCCTCCGGGAGGAGATTTTTCTGATCCTGTTACATCTGCCACTCTCAGCATTGTCCAGG TTTTCTGGGGTCTGGACAAGAAACTTGCTCAGAGGAAACATTTCCCATCTGTGAACTGGCTGATTTCTTACTCTAAATACTCTACGGCATTGGAGCCGTT CTACGAGCAATTTGATCCTGATTTTATCAACATCAGAACCAAGGCTAGAGAAGTGCTGCAAAGAGAAGATGACTTGAATGAAATCGTGCAGCTTGTTGGA AAGGATGCTCTGGCTGAAGGAGATAAGATTACTTTAGAGACTGCAAAACTGTTAAGGGAAGATTATCTCGCTCAGAATGCATTTACCCCATACGACAAAT TCTGTCCGTTCTACAAATCTGTTTGGATGATGCGCAACATTATTCACTTCTACAACTTGGCCAATCAGGCTGTCGAGAGAGGAGCTGGTATGGATGGTCA GAAGATCACATACTCCCTTATCAAGCATCGGATGGGCGACCTTTTCTACCGCTTAGTGTCTCAGAAATTCGAGGACCCGGCTGAAGGGGAACCTGCTTTA GTAGCGAAATTCCAGAAGTTGCGCGATGATCTGACTTCAGGTTTCCGCGCACTGGAGGACGAGACCCGGTGA
AA sequence Show only first row Show all	>Lus10037321 pacid=23152489 polypeptide=Lus10037321 locus=Lus10037321.g ID=Lus10037321.BGIv1.0 annot-version=v1.0 MPSVYGARLTTFEDSEKESEYGYVRKVSGPVVVADGMAGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTRKPLSVELGPGILGN IFDGIQRPLKTIARLSADVYIPRGVSVPALDKDTLWEFQPKKLGEGDVLTGGDLYATVFENSLMQHHVALPPDAMGKITYIAPPGQYSLKDTVLELEFQG EKKKITMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTL PDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGG PERNGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALEPFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVG KDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGMDGQKITYSLIKHRMGDLFYRLVSQKFEDPAEGEPAL VAKFQKLRDDLTSGFRALEDETR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10037321 [exp]	0	1
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001368 [exp]	3.3	0.9061
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Lus10018902 [exp]	5.7	0.8889
AT2G21390			Coatomer, alpha subunit (.1)		Lus10025780 [exp]	6.6	0.8970
AT3G18270		CYP77A5P	"cytochrome P450, family 77, s...		Lus10020434 [exp]	7.1	0.8195
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10036156 [exp]	8.0	0.8840
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10007538 [exp]	10.5	0.8575
AT5G65620			Zincin-like metalloproteases f...		Lus10019236 [exp]	12.3	0.8450
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10035737 [exp]	12.4	0.8543
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Lus10028597 [exp]	13.5	0.8651
AT5G05010			clathrin adaptor complexes med...		Lus10017131 [exp]	13.8	0.8829

Compare expression of checked genes

Lus10037321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.