Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49950 632 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT1G34340 560 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT3G50790 200 / 2e-58 esterase/lipase/thioesterase family protein (.1) AT2G03140 101 / 4e-22 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035739 [exp] 1040 / 0 AT5G49950 627 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037325 [exp] 992 / 0 AT5G49950 627 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035744 [exp] 973 / 0 AT5G49950 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10036590 [exp] 852 / 0 AT5G49950 638 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035807 [exp] 373 / 3e-126 AT5G49950 283 / 6e-92 alpha/beta-Hydrolases superfamily protein (.1) Lus10035741 [exp] 248 / 2e-79 AT5G49950 144 / 2e-40 alpha/beta-Hydrolases superfamily protein (.1) Lus10001673 [exp] 202 / 7e-59 AT3G50790 536 / 0.0 esterase/lipase/thioesterase family protein (.1) Lus10017332 [exp] 164 / 7e-45 AT3G50790 431 / 9e-150 esterase/lipase/thioesterase family protein (.1) Lus10034894 [exp] 109 / 1e-24 AT2G03140 697 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G223100 [exp] 675 / 0 AT5G49950 648 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G115000 [exp] 546 / 0 AT1G34340 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G146500 [exp] 207 / 4e-61 AT3G50790 512 / 0.0 esterase/lipase/thioesterase family protein (.1) Potri.006G136900 [exp] 110 / 5e-25 AT2G03140 1356 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10037322 pacid=23152582 polypeptide=Lus10037322 locus=Lus10037322.g ID=Lus10037322.BGIv1.0 annot-version=v1.0 ATGGATGGATGTTCAGCAGCTGAGTCTGTTTCTGGTTCTCCGTACCATCTTCTTTTCAAAGCTCTGTCTCTAATCCCTCCCGTTCACTATGCCGCTTTCC TCCTATCTCTTCTTCTGGTCTTCCTCTACAATTTCCTGGAGATTCATTTCCTCCGCGATTTCCGGACTGGCTTCAGAGGGAATCCGGTCAATCTAACTTA CAATGCTTCGTCAGAGCTCTACCGCTCCATTGTTTCCAAGTGCAGAGTCCTCCACGGCAGGTATTTACCAACTCTATGGCTTTGTAGTCCACATCTACAA ACAGCATTCTTGACTTTCTTCGGTAATCCTCCTCGTTTCACCTATAAAAGGGTGCTATTCCGTACAAGTGATGGGGGGACAATTGCTTTGGACTGGCTCT TGCACTCTCATGTTAATGGCGATATTGACGACACCTTGAATGAAACGGTCCCGCAGAAAACTGACAAAGCTCCTATTTTGATAGTTATTCCTGGCTTAAC AAGCGACTCTGATGCTTCTTACGCAAAGCACCTTGTTTTCAAGATGGCAAAACAGGGTTGGAATGTTGTGGTAGCCAATCATCGTGGACTAGGAGGTGTA CAGATAACTTCTGACTGCTTCTACAATGCTGGGTGGACAGAAGACACGAGGAGAATTATTGAGCATATTCATCAGGAATATCCAGATACTCCTCTCTATG TGGTTGGGACTAGTATCGGTGCCAATATCCTGGTGAAGTATCTAGGGGAGGACTCAGTTAATGTTCCCATCGTAGGTGCTGTTGCTGTGTGCTCTCCTTG GGATCTGACGATTGGTGACAGGTTTATCAAGCGAAGATTTGTTCAAAAAGTTTATGACAGGGCACTCGGGGCTGGCCTCGTAAGTTATGCTACACTGCAT CAAACTATCATGTCTCGACTTGTAGACTGGGATACTATTACCAAGTCGCGTTCTCTCCGGGACTTCGATAACTATGCTACCTGTTCTCTTGGGAAATTTG AGACAGTAGACACATACTACAGACGTTCTAGCTCTGTTAACCATGTGGGGAACGTTGCAGTGCCCCTTCTTTGCATAAGTGCCTTGGATGACCCTGTTTG TACAAGAGAAGCTATTCCATGGGATGAATGCAGGATGAATCCAAACATTGTCCTGGCTGCAACAGAACATGGAGGCCACCTAGCTTATTATGAAGGACTT ACCGCTAATAACATGTGGTGGGTGAGAGCTGTTAGTGAATTCCTCGAGGTGATGCGGTCTAGCCCATTAAAGGACAAACCAAAAAGGGTGGAACAATCTA TCACAACCAATCCATTGGAATCGAAAATCGACCAGGGGCCTTTCATTAATGTAGTGGATAATGGAACTGTAGCTGCAGTTGCCAACATCCACAAAGAGGA TGCAGGAGCAGCAGATGACACTAGCAACGTTTACAGTACTGGCAAGAAGGACAATGAGGAAGAAAACAACAGCAGGGATGTGGCGACGTCCAAGAAAATG GACATCGAGTCTCCTTTTGATCAGAAACTCAGCGACCTTATTGATCCCATAAAGAGACAAATGACTAAGCTCAGAAGGCATAGCAGAACATCCATCTGGC TTCTTGCTTGCATAGCAATCGTAACAACTTGGCCTGAGTTGGGTTCAGGGCTTCTTTTCTACCTCAAGAAATAG
AA sequence Show only first row Show all	>Lus10037322 pacid=23152582 polypeptide=Lus10037322 locus=Lus10037322.g ID=Lus10037322.BGIv1.0 annot-version=v1.0 MDGCSAAESVSGSPYHLLFKALSLIPPVHYAAFLLSLLLVFLYNFLEIHFLRDFRTGFRGNPVNLTYNASSELYRSIVSKCRVLHGRYLPTLWLCSPHLQ TAFLTFFGNPPRFTYKRVLFRTSDGGTIALDWLLHSHVNGDIDDTLNETVPQKTDKAPILIVIPGLTSDSDASYAKHLVFKMAKQGWNVVVANHRGLGGV QITSDCFYNAGWTEDTRRIIEHIHQEYPDTPLYVVGTSIGANILVKYLGEDSVNVPIVGAVAVCSPWDLTIGDRFIKRRFVQKVYDRALGAGLVSYATLH QTIMSRLVDWDTITKSRSLRDFDNYATCSLGKFETVDTYYRRSSSVNHVGNVAVPLLCISALDDPVCTREAIPWDECRMNPNIVLAATEHGGHLAYYEGL TANNMWWVRAVSEFLEVMRSSPLKDKPKRVEQSITTNPLESKIDQGPFINVVDNGTVAAVANIHKEDAGAADDTSNVYSTGKKDNEEENNSRDVATSKKM DIESPFDQKLSDLIDPIKRQMTKLRRHSRTSIWLLACIAIVTTWPELGSGLLFYLKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10037322 [exp]	0	1
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10028242 [exp]	1.0	0.9700
					Lus10005394 [exp]	7.6	0.9607
AT1G80530			Major facilitator superfamily ...		Lus10017480 [exp]	9.0	0.9587
AT4G19350		EMB3006	embryo defective 3006 (.1)		Lus10033307 [exp]	9.4	0.9136
AT1G31710			Copper amine oxidase family pr...		Lus10013355 [exp]	10.0	0.9524
AT3G01516			unknown protein		Lus10014544 [exp]	12.8	0.9476
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024616 [exp]	13.4	0.9569
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10020803 [exp]	14.7	0.9571
					Lus10005393 [exp]	15.2	0.9555
AT4G10350	NAC	BRN2, NST4, ANA...	BEARSKIN 2, NAC domain contain...		Lus10039153 [exp]	15.3	0.9513

Compare expression of checked genes

Lus10037322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.