Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 79 / 2e-16 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT1G49480 63 / 2e-11 B3 REM19, RTV1 related to vernalization1 1 (.1) AT5G18090 48 / 3e-06 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G18000 45 / 2e-05 B3 VDD VERDANDI (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035743 [exp] 73 / 4e-16 ND / Lus10036045 [exp] 62 / 2e-10 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10009688 [exp] 61 / 3e-10 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10014359 [exp] 60 / 4e-10 AT3G18990 79 / 1e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10012041 [exp] 60 / 5e-10 AT3G18990 388 / 8e-135 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025507 [exp] 59 / 1e-09 AT3G18990 91 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10026067 [exp] 56 / 9e-09 AT3G18990 76 / 6e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10021006 [exp] 53 / 1e-08 AT1G49480 138 / 5e-42 related to vernalization1 1 (.1) Lus10027940 [exp] 56 / 2e-08 AT3G18990 371 / 4e-128 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191500 [exp] 65 / 1e-11 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 59 / 1e-09 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 57 / 5e-09 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 55 / 2e-08 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.004G146900 [exp] 54 / 5e-08 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 51 / 4e-07 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 47 / 2e-05 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10037323 pacid=23152605 polypeptide=Lus10037323 locus=Lus10037323.g ID=Lus10037323.BGIv1.0 annot-version=v1.0 ATGGCGGAACCTGAAGCTACTGTTGATGGACGGAGAAGACCTGAAGGCCGTTTGCTTTTCGACTCCGGGACACTTCGTTTCTCCAAATTCATCTCACGTC AAACCCTAAACACTAGCAGGCTTTATACTCTGGTTTTCCAGTACGACAGAGCCGCTCTCTTCTCCGTCTTCATATTCGATGCTTGTGGGTCCGAGATTGA GTACCCTCTACTTGATGTAGCTGCTGGTGTTGGGAAGAAACTTCACACACATTCTCCTGAAATGCCGAGGAAGAGGAGCAGATCCGACAGTTACTCTCCG AAGAGGCACGCCATGGCTGCTACGGGTGGTTCAACCAGGACTAATGATCATGGTGGAAGCAGCAGTAGAGCGCCAGCTGAATCAGAGAGATTGGTTTCCA GGAGCAGAGGCTGTAATGGGAAGCAACTGTTCAGAGAGGAAAGAAGTAATGTCCAGGAAACTTGTGCAATGGCGGCTGCTCTTAGTTCCAGGTGGAAAGA TACCAGTGGGAACCAGTGGAGCAAAGAGAGAAGCAGCTGGAAGAATTCGAAACCATCAAAGGCGAAGAATCCGGGTTTCAATGTCACATTAGGCAAGCGT TCCGATTTCTTCTTGTTTTTGGGTACACAGACTATACCATCAAGCATTTCGGAACTATACATGAAGCAGAATCCTGAGATCCTAAAGCTTCAGGTGGGAA GCAAGTCATGGAGGGTGAAGGCTACCAAAGGTAATGGTCACTCATACAGGATGTATGGTGGCTGGTTGGACTTTGCGAGGGAAAATTCCGTAAAAGAAGG GGATATTTGCTGCTTTGAGCTGATGGACAAGGATGACGACATTGTGCTCAAAGTCACCATCTGCAACACACTTCTAGTAGCCAAGAAAATGCTTGCCTGA
AA sequence Show only first row Show all	>Lus10037323 pacid=23152605 polypeptide=Lus10037323 locus=Lus10037323.g ID=Lus10037323.BGIv1.0 annot-version=v1.0 MAEPEATVDGRRRPEGRLLFDSGTLRFSKFISRQTLNTSRLYTLVFQYDRAALFSVFIFDACGSEIEYPLLDVAAGVGKKLHTHSPEMPRKRSRSDSYSP KRHAMAATGGSTRTNDHGGSSSRAPAESERLVSRSRGCNGKQLFREERSNVQETCAMAAALSSRWKDTSGNQWSKERSSWKNSKPSKAKNPGFNVTLGKR SDFFLFLGTQTIPSSISELYMKQNPEILKLQVGSKSWRVKATKGNGHSYRMYGGWLDFARENSVKEGDICCFELMDKDDDIVLKVTICNTLLVAKKMLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10037323 [exp]	0	1
AT2G26820		ATPP2-A3	phloem protein 2-A3 (.1)		Lus10026891 [exp]	1.0	0.8990
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10017170 [exp]	2.4	0.8630
					Lus10019981 [exp]	7.7	0.8764
AT3G14300		ATPMEPCRC, ATPM...	A. THALIANA PECTIN METHYLESTER...		Lus10010002 [exp]	8.8	0.6345
					Lus10015798 [exp]	19.4	0.7530
AT4G13990			Exostosin family protein (.1)		Lus10005492 [exp]	20.7	0.7561
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Lus10031963 [exp]	21.4	0.6203
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	27.3	0.7382
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015158 [exp]	29.5	0.7382
AT5G16610			unknown protein		Lus10031615 [exp]	30.4	0.6348

Compare expression of checked genes

Lus10037323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.