Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10530 657 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 62 / 8e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT2G33340 61 / 1e-09 MAC3B MOS4-associated complex 3B (.1.2.3) AT3G21540 59 / 7e-09 transducin family protein / WD-40 repeat family protein (.1) AT1G61210 57 / 4e-08 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 56 / 7e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT1G04510 56 / 7e-08 MAC3A MOS4-associated complex 3A (.1.2) AT5G23430 55 / 1e-07 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G25150 54 / 2e-07 TAF5 TBP-associated factor 5 (.1) AT2G41500 53 / 3e-07 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024656 [exp] 675 / 0 AT3G10530 483 / 1e-169 Transducin/WD40 repeat-like superfamily protein (.1) Lus10035740 [exp] 600 / 0 AT3G10530 431 / 2e-147 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032289 [exp] 551 / 0 AT3G10530 443 / 4e-152 Transducin/WD40 repeat-like superfamily protein (.1) Lus10035742 [exp] 171 / 1e-50 AT3G10530 214 / 2e-67 Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 62 / 7e-10 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10014477 [exp] 58 / 1e-08 AT2G33340 784 / 0.0 MOS4-associated complex 3B (.1.2.3) Lus10007449 [exp] 58 / 2e-08 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1) Lus10021059 [exp] 57 / 2e-08 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10018458 [exp] 56 / 7e-08 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G232500 [exp] 716 / 0 AT3G10530 727 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G029100 [exp] 699 / 0 AT3G10530 732 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G171600 [exp] 61 / 1e-09 AT2G33340 830 / 0.0 MOS4-associated complex 3B (.1.2.3) Potri.010G066000 [exp] 59 / 4e-09 AT2G33340 819 / 0.0 MOS4-associated complex 3B (.1.2.3) Potri.010G255400 [exp] 56 / 4e-08 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 55 / 9e-08 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.006G045800 [exp] 55 / 1e-07 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.018G020200 [exp] 53 / 4e-07 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.012G065200 [exp] 52 / 7e-07 AT3G42660 1107 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.008G002300 [exp] 50 / 3e-06 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF08149 [flax] [poplar] BING4CT BING4CT (NUC141) domain
Representative CDS sequence Show only first row Show all	>Lus10037324 pacid=23152305 polypeptide=Lus10037324 locus=Lus10037324.g ID=Lus10037324.BGIv1.0 annot-version=v1.0 ATGGCGGAGGAATTATCTGCAGAGTTCAATGTGAATCTGCAGAAGTACCTTAGAGGAGAAGCTCCTGATCTAGAGGCACTGAAAGATAAAAAGTTAAAAG GTCGGCAAATTGTTAGAGAAAAATTACATGAAAAGTCTGCAACTGTTGCTGCAAAGCATGAAAAGTGGCTTAAACCAAGTGAGGGAAGCTTTATCGAGGC TGAAGGTATTGAGAAGACATGGAGGATTAAACAGAATGAGATTGCTCGTGAAGTAAATGTTAAAAGTTCAAGTAATCAGTATGATATAGTGTTGCCAGAT CTTGGTCCCTATACTCTGGATTTCACTGCCAGTGGTCGATACATAGCCCTTGCTGGACGCAAGGGGCATGTGGCTATTATAGACCTGATAAGTATGAACA AAATTAGAGAGATGCAGGTTAAAGAAACAGTGCGAGATGTTGTGTTTTTGCACAATGAGACCTTCTTTGCGGTTGCCCAGAAAAAATACCCTTATATTTA TAACCGGGATGGAACTGAGCTTCATTGTTTAAAGGAACATGGCCCAGTGTCGCATCTGCAGTTTCTTAAAAACCATTTCCTCTTAGCTTCATTAAGTACA TTTGGGCAACTTCGATACCAGGATGTAACAACGGGTCAGATGATAGGTAACTTCCGTACCGGGATGGGACGTGCCGACGCGATGCAGGTCAACCCTTTCA ACGGCGTCCTAGCAGTAGGGCACTCTGGTGGTACAGTAACCATGTGGAAGCCCACGAGTGCTGCTCCCTTAGTGAAGATGCTCTGCCATCCTGGTCCAAT CTCTGCTCTAGCATTCCACCCGAATGGCCATCTCATGGCCACAGCCGGAAGGGAGAAGAAAATCAAGATTTGGGACTTGAGGAAATTCGAGGTCGTCCAA ACCATACCGGGGCATCATGCCAAGACTTTGGATTTCAGCCAAAAGGGTTTACTAGCTGCAGGAACGGGATCGTACGCTCATGTTTTCGGGGACTTGTCAG GATCGGGAACTTACAGCCGGTACATGGGTCATTCGATGGTGAAAGGATACCAGATAGGGAAAGTATTGTTTAGGCCGTACGAAGATGTTCTGGTTTTAGG ACACTCGAGAGGTTGGTCCTCTATTCTCATTCCATGTTCCGGGGAGCCTAATTTTGATTCGTGGGTTGCGAATCCGTACGAGACAAGTAAACAGAGAAGA GAGAAGGAGATCCATAATCTACTGGACAAGCTGCCACCGGAGACGATAATGTTGGATCCTTCGAAGATCGGTACATTGAGGACAAGCAGGAGGAAGGAGA AACCTACGAAGAAGGAGATGGAAGAGGAGAAGGAGGCTGCGGTGGAAGCAGTGAAAGAGATTGCATTGAAGAAGAAGACAAAAGGTAGGAACAAGACGAG CAAGAGAGTGATGAAGAGAAAGGTGATGGTGGATAAAGCTAAGAAACCTTTCTTGGAGAAGCAAAAGCAGGAGGAGGAAGGCAAAGTTAAAGTTGATGAT GGGAAGAAGAGGAAGCACGACGACGAAACTCAACTGCCTGCTTCTCTCCAGAGATTCGTGCGTAAGAAGGCTGCTTAG
AA sequence Show only first row Show all	>Lus10037324 pacid=23152305 polypeptide=Lus10037324 locus=Lus10037324.g ID=Lus10037324.BGIv1.0 annot-version=v1.0 MAEELSAEFNVNLQKYLRGEAPDLEALKDKKLKGRQIVREKLHEKSATVAAKHEKWLKPSEGSFIEAEGIEKTWRIKQNEIAREVNVKSSSNQYDIVLPD LGPYTLDFTASGRYIALAGRKGHVAIIDLISMNKIREMQVKETVRDVVFLHNETFFAVAQKKYPYIYNRDGTELHCLKEHGPVSHLQFLKNHFLLASLST FGQLRYQDVTTGQMIGNFRTGMGRADAMQVNPFNGVLAVGHSGGTVTMWKPTSAAPLVKMLCHPGPISALAFHPNGHLMATAGREKKIKIWDLRKFEVVQ TIPGHHAKTLDFSQKGLLAAGTGSYAHVFGDLSGSGTYSRYMGHSMVKGYQIGKVLFRPYEDVLVLGHSRGWSSILIPCSGEPNFDSWVANPYETSKQRR EKEIHNLLDKLPPETIMLDPSKIGTLRTSRRKEKPTKKEMEEEKEAAVEAVKEIALKKKTKGRNKTSKRVMKRKVMVDKAKKPFLEKQKQEEEGKVKVDD GKKRKHDDETQLPASLQRFVRKKAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10530			Transducin/WD40 repeat-like su...		Lus10037324 [exp]	0	1
AT1G12650			unknown protein		Lus10017837 [exp]	1.4	0.8857
AT5G59240			Ribosomal protein S8e family p...		Lus10016587 [exp]	4.6	0.8391
AT1G14620		XTR2, EXGT-A2, ...	decoy (.1.2)		Lus10030524 [exp]	5.0	0.8482
AT1G12650			unknown protein		Lus10024493 [exp]	5.2	0.8376
AT2G06010		ORG4	OBP3-responsive gene 4 (.1)		Lus10029795 [exp]	9.4	0.7934
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Lus10039931 [exp]	9.5	0.8581
AT3G10530			Transducin/WD40 repeat-like su...		Lus10035742 [exp]	10.4	0.8546
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10042047 [exp]	10.5	0.8323
AT4G27090			Ribosomal protein L14 (.1)		Lus10003627 [exp]	12.8	0.7958
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10027795 [exp]	13.4	0.8488

Compare expression of checked genes

Lus10037324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.