Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49950 603 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT1G34340 550 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT3G50790 197 / 3e-57 esterase/lipase/thioesterase family protein (.1) AT2G03140 99 / 2e-21 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037322 [exp] 958 / 0 AT5G49950 632 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035744 [exp] 956 / 0 AT5G49950 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035739 [exp] 929 / 0 AT5G49950 627 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10036590 [exp] 825 / 0 AT5G49950 638 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035807 [exp] 338 / 2e-112 AT5G49950 283 / 6e-92 alpha/beta-Hydrolases superfamily protein (.1) Lus10035741 [exp] 321 / 1e-107 AT5G49950 144 / 2e-40 alpha/beta-Hydrolases superfamily protein (.1) Lus10001673 [exp] 197 / 4e-57 AT3G50790 536 / 0.0 esterase/lipase/thioesterase family protein (.1) Lus10017332 [exp] 160 / 2e-43 AT3G50790 431 / 9e-150 esterase/lipase/thioesterase family protein (.1) Lus10034894 [exp] 106 / 1e-23 AT2G03140 697 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G223100 [exp] 633 / 0 AT5G49950 648 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G115000 [exp] 531 / 0 AT1G34340 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G146500 [exp] 203 / 3e-59 AT3G50790 512 / 0.0 esterase/lipase/thioesterase family protein (.1) Potri.006G136900 [exp] 107 / 4e-24 AT2G03140 1356 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10037325 pacid=23152412 polypeptide=Lus10037325 locus=Lus10037325.g ID=Lus10037325.BGIv1.0 annot-version=v1.0 ATGGATGGATGTGGAGCAGCTGAATCTGTTTCTGGTTCTCCGTACCATCTTCTTTTCAAAGCTCTGTCTCTAATCCCTCCCGTTCACTATGCCGCTTTCC TCCTATCTCTTCTTCTGGTCTTCCTCTACAATTTCCTGGAGATTCATTTCCTCCGCGATTTCCGGACTGGCTTCAGAGGGAATCCGGTCAATCTAACTTA CAATGCTTCGTCAGAGCTCTACCGCTCCATTGTTTCCAAGTGCAGAGTCCTCCACGGCAGGTATTTACCAACTCTATGGCTTTGTAGTCCTCATCTCCAA ACAGCATTCTTGACTTTCTTCGGGAATCCTCCTCGTTTCACCTATAAAAGGGTGCTATTTCGTACAAGTGATGGGGGGACAATTGCTTTGGACTGGCTCT TGCACTCTCATGTTAATGGCGATATTGACGACACCTTGAATGAAACGGTCCCGCAGAAAACTGACAAAGCTCCTATTTTGATAGTTATTCCTGGCTTAAC AAGCGACTCTGATGCTGCTTACGCAAAGCACCTTGTTTTCAAGATGGCAAAACAGGGTTGGAATGTTGTGGTAACCAATCACCGTGGACTAGGAGGTGTA CAAATAACTTCTGACTGCTTCTACAATGCTGGGTGGACAGAAGACACGAGGAGAATTATTGAGCATATTCATCAGGAATATCCAGATACTCCTCTTTATG TGGTTGGGACTAGTATCGGTGCCAATATCCTGGTGAAGTATCTAGGGGAGGACTCAGTTAATGTTCCCATCGTAGGTGCTGTTGCTGTGTGTTCTCCTTG GGATCTGACGATTGGTGACAGGTTTATCAACCGAAGATTTGTGCAAAAACTTTATGACAGGGCACTCGGGGCTGGCCTCGTAAGTTATGCTACACTGCAT CAAACTATCATGTCTCGGCTTGTAGACTGGGATACTATTACCAAGTCGCGTTCTCTCCGGGACTTCGATAACTATGCTACCTGTTCTCTTGGGAAATTTG AGACAGTAGACACATACTACAGACGTTCTAGCTCTGTTAACCATGTGGGGAACGTTGCAGTGCCCCTTCTTTGCATAAGTGCCTTGGATGACCCTGTTTG TACAAGAGAAGCTATTCCATGGGATGAATGCAGGATGAATCCAAACATTGTCCTGGCTGCAACAGAACATGGAGGCCACCTAGCTTATTATGAAGGACTT ACCGCTAGTAACATGTGGTGGGTGAGAGCTGCTAGTGAATTCCTCGAGCTGATGCGGTCTAGCCCGTTAAAGGACAAACCAAAAAGGGTGGAATCATCTA GCACAACCAATCCACTGGAATCGGAAATCGACCAGGGGCCTTTCATCAACGCAGTGGATGACGGAACTGTAGCTGCAGTCGTCGACATCCACAAAGACGA TGCAGCAGATGACGTGGACCATACTGGCAGGGAGGACAGTGAGGAAGAAGAAAGCAGCAAGGATGTGGAAACGCCCAAGAAAGTGGATCCTGGAAACAAT CATGAGTCTCCTTCTGATAAAAAGCTGAGCGATCTGATTGATCCCGTAAAGAGACAAATAACTCAACTCAGACGGCATAGCAGAACGTCAATATGGTTTC TTGCTTACATAGCAATTGTAGCAACTTGGCCTGTGTTGGGGTTCTGGCCTTCTTTTCTACCTCAAGAGAAAGTCACGGAGAAGCTTCAGGCGACCAGCAG CTGTGCCTAG
AA sequence Show only first row Show all	>Lus10037325 pacid=23152412 polypeptide=Lus10037325 locus=Lus10037325.g ID=Lus10037325.BGIv1.0 annot-version=v1.0 MDGCGAAESVSGSPYHLLFKALSLIPPVHYAAFLLSLLLVFLYNFLEIHFLRDFRTGFRGNPVNLTYNASSELYRSIVSKCRVLHGRYLPTLWLCSPHLQ TAFLTFFGNPPRFTYKRVLFRTSDGGTIALDWLLHSHVNGDIDDTLNETVPQKTDKAPILIVIPGLTSDSDAAYAKHLVFKMAKQGWNVVVTNHRGLGGV QITSDCFYNAGWTEDTRRIIEHIHQEYPDTPLYVVGTSIGANILVKYLGEDSVNVPIVGAVAVCSPWDLTIGDRFINRRFVQKLYDRALGAGLVSYATLH QTIMSRLVDWDTITKSRSLRDFDNYATCSLGKFETVDTYYRRSSSVNHVGNVAVPLLCISALDDPVCTREAIPWDECRMNPNIVLAATEHGGHLAYYEGL TASNMWWVRAASEFLELMRSSPLKDKPKRVESSSTTNPLESEIDQGPFINAVDDGTVAAVVDIHKDDAADDVDHTGREDSEEEESSKDVETPKKVDPGNN HESPSDKKLSDLIDPVKRQITQLRRHSRTSIWFLAYIAIVATWPVLGFWPSFLPQEKVTEKLQATSSCA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10037325 [exp]	0	1
AT1G69340			appr-1-p processing enzyme fam...		Lus10037119 [exp]	3.7	0.8691
AT1G63500			Protein kinase protein with te...		Lus10008494 [exp]	8.5	0.8589
AT2G16460			Protein of unknown function (D...		Lus10018079 [exp]	9.8	0.8368
AT1G06750			P-loop containing nucleoside t...		Lus10021225 [exp]	11.7	0.7772
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10007698 [exp]	17.9	0.8190
					Lus10006286 [exp]	20.0	0.8106
AT4G30900			DNAse I-like superfamily prote...		Lus10036263 [exp]	21.1	0.7746
AT1G04280			P-loop containing nucleoside t...		Lus10021226 [exp]	28.5	0.8238
AT5G41790		CIP1	COP1-interactive protein 1 (.1...		Lus10032362 [exp]	32.3	0.7411
AT4G30310			FGGY family of carbohydrate ki...		Lus10001312 [exp]	33.5	0.8065

Compare expression of checked genes

Lus10037325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.