Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18730 1153 / 0 BRU1, MGO3, TSK TONSOKU, MGOUN3, BRUSHY1, tetratricopeptide repeat (TPR)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035748 [exp] 2432 / 0 AT3G18730 1194 / 0.0 TONSOKU, MGOUN3, BRUSHY1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10035746 [exp] 312 / 5e-97 AT3G18730 99 / 3e-23 TONSOKU, MGOUN3, BRUSHY1, tetratricopeptide repeat (TPR)-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G110800 [exp] 1459 / 0 AT3G18730 1310 / 0.0 TONSOKU, MGOUN3, BRUSHY1, tetratricopeptide repeat (TPR)-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10037327 pacid=23152451 polypeptide=Lus10037327 locus=Lus10037327.g ID=Lus10037327.BGIv1.0 annot-version=v1.0 ATGGCTAAAGACGACGGGAAATTAAGCGCCTCGAAGAGAGCGTACAAGACAGCGCAAGAGGAGGGGAATCGACAAGACGAAGCGCGATGGGCGAACGTGA TAGGCAACATACTGAAGGATAGGGGAGAGTACGTTGAGGCACTCAGATGGATGCGGAAGGATTATGACATCTCTGTCAGATACTTACCGGAGAAAGACCT GTTGGCTACTTGTCAGTCTATCGGGGAGCTCTACCTCCGTCTCGAGAACTTCTCTGATGCATTGGTTTATCAGAAAAGACATCTTGAGCTAGCAAATAGT GCAAACAACCTTGTCGAGCAGCAAAGAGCAAGCACTCAACTTGGTCGCTCATACCATGCGATGTTCTTGAGGTCCGATGATGATTACTACGCAGTTAAGA ATGCCAAAAAGTACTTCAAGCTTTCAATGAAGCTAGCTGAGACTCTCAAGGCAAATCCACCGTCTAATAATTCTTCTTTCCTCAAGGAGTACATAGATGC ACATAACAACATCGGAATGCTTGAATTGGATCTTGATAACTTGGAATTGGCAACTGATATCCTCATGAAAGGGCTACAGATCTGTGACGAGGAAGAGGTA GATGAAAACGATGATGGACGAAGCAGGCTCCATCACAACCTTGGAAATTGTTACATAGAGTTAAGAAAGTGGGAGAAAGCCCGGGAACATATTGAGAAAG ATATTCTGATATGTAAAAAAATTGGTCAGTGCCAAGGGGAGGCAAAGGGCTTCATAAATCTTGGTGAACTACATTATAGGGTCCAAAAGTACGAAGATGC AGTTCTTTGCTACCAGATGGCTCTTAAACTTGCAAAATCCATGGAAGATGAAGATGCATTGGTGAAACAGATTGATCAGAACATCATGACCATAAGAGAA GCCATGAAGGTAATGGATGAGTTGAAAATCGAAGAGCAGAATCTTAAGAAGTTAACAAGAGATATGATTGCTGTAAGAGGCACCGCACGTGAACGGAAGT CTTTGCTGAAGCTGTATACAAAACTAGATCACCTTATTGAGAAATCCGGCACGATCTCTGCATGGCTGAAGCATCGTGAATTTGCAAAACAGAAAAAGGA GGTGGCAGCTCAACTATGTGACAAAATCAAGCTGAACGACTCGTATCTGGCTCTAGGAGAGTCATACCGGAAGATTAGAGACTTCAACAAGGCTTACAAA TGGTTCTCAAAGGCTTGGGAGGGATCTAAGTTGATTGGTTATTTGGAGGGTCAAGCATTAGCTAAAATAAATATCGGTGATGTTCTTGACTGTCGTGGTG ATTGGTCAGGTGCACTAGCTACTTTTGAAGAAGGCTATAGGATAGCCGTGGAAGCTAATGTTCCTTCTGCGCAGCTTCAAGCCCTTGAGAATATGCACTA CAGCCAAATGATGAGATTTCAGAATGCTGAAGAGGCCAGGAGGTTACAACATGAACTTGAAAAATTGAAGCAGTTTGGCGGAAGGGAGGCTGAGAAGAAC AATTTGGCCGCTGATCACTGCTCTGAGACTGACACAGAAGATGATTATTTGTCTGATGGTTCATTTTCAAATCCATGCTCTCCAAACTCCGGCGACTCCT TGCTTCGGCGATCCACATCTTCCGCATCCATTGAAGAGTTCAAGGATGACACACCTCTGATTTCACTGCTCAAGTCCACTAAACGTTTGACTAGAAAAAC TGATGCCAATATCAAAGAGCCTTATGTATCTAATAATCCCAATGAAGCTTCTCCAATATGTTCTGCAATCCCAACTACAAGTCAACAATCAGTTGGGCGT AAGCGTGTTAGGGTCATCCTTTCTGATGATGAAAATGAAACAAATGAGGGTGTGGACTACTTGGAGAGGAAGTTGCCTACCACTCCAGTTGAAGTTGTTG CTACATCTGACGAGACTAGGAGGAGAAACATTGGAGCATGTTCTTCATCTGAAATTCGGGATTTATCGACGGATGGTTCGAAATATGCCACTGATTCATC AAATCAAGTTAAAGATGAAGATGTTGCTTTTCTCTACAAGTCTCCAAGTGCTAAAGGGCGAGCCATAACATTCAACATTGCCAACGACCAGATAAGTTTT GAGGCTGGCTTGAGCTTAGCTTTTAGTGGATTGAGCATTGAATCTTTGAGCGTTGAAGTCGCATGCTTATACTATTTACAGCTTCCTACAGATAAGAGAT GCCAAGGTTTGTTGCCCATCATTCAGCACTTGAAGCATTCTGGACAAATTTTGGAATCATTGGACGACCTTGAAGCTCTCAACAACGATGCGGGGAAAAT ATTCATTGAAGTTTCCATAAATGGATGGATCCAGAAGCGGTTGATGAAACTGTACATTGACTGCTGCGGAGAGCTGCATGAAACACCTGATATAAAGTTA CTAAAGAAGCTCTACATTTCGGAGGTGGAGGATGAAGTTATTGCATCCGAATGTGGGCTGCAAGATATATCTATAGCTCCATTATTGAACGCCCTACAAA CACATAAAACAGTTCTCATGTTGGATCTTTCTCATAATTTGTTAGCTCGTTCTCGAATCTCGATCAATGTTGTCCATTGCCTAATGCTAGGAAGTAGGAG GCCTAAGAGTTATTTTCTTGCAGGAAATGGAACGGTGGAGAAACTTGAACAAATTTTCACAACTGGCCAAAAACATGGTGATCTATCTTTAGACCTGCAC TGCAACCGATTTGGTCCAACTGCATTGTTACAGATCTGTGAATGTCCTGTCCTCTTTTCCCGACTTGAGGTGCTAAATATCTCTGGTAATCGTCTCACTG ATGCATGTGGATCATACCTGTCAACTATATTGGGTAAATGTAAAGATGCCAACAGTCTTTCTTTTGCAGCTCTTTACAGTTTGAATATAGAGCGCTGCTC CATCACATCTAGAACGATTCAAAAGGTTGCTGATGCAATACATTCTGGTTCAGTCTTGGCACAACTTTCCATAGGATACAATTCTTTATCAGGGACTTCC ATCATCAATCTATTGATGAAATTATCCACCTTGAATAGCTTTACAGAACTGAATCTAAGTGGTCTAAAGTTGAACAAGCCAGTTATAGACAGCCTCTGTG AACTCACAAAAAGCTCTTGTTTGACAAACCTGAGGGTTGGGAGCACTGGCATAGGAAATGAATGGGCTTTGCAGTTGACCGATTCATTGTCCAGCGGATC TCAGGAATTTCTTAAACTTGACCTTTCATACTGCACCCTGACATCCACCTTCGTTCAGACACTTACCACGAATTCAAGCCTGGCTTGCTGCATTCTTGAG CTTAATCTCGAAGGAAATCCTATTCTGCCCGAGGGAGGAAGTGCATTGGTATCACTAGTCAAGCAACCAGCGTGTTCCCTGAGACTTCTCATCCTAAACA AATGTCAGCTGGGACTTCCCCTCATTCTTCAATTGGTCCAAGCACTCGCAGAGAATGATCAGCTGGAGGAACTCCATGTTGCTGAGAATGACGATCTTCA AAAATTAGCCTTATCAACTGATCAGCAGACAGCAACAATCGCATCTCATTCTGAGGCAGCGGATCACGAGGGAAGATTAGTTGATTGTCAACTAAACATG GAAAGTGACGGCCTTGAAGTTGCAGATAGTGAGGATTCAACCAGAGTCGAGGCTGCTGCTATTCGATCTGAGCTGAACGACACCTGCACAAGCTCATCCT GGGGTAAGAAGAAGAAGAAGAAGAATGAAGACGAGTCAATAATATCGGCTCAAATCGTTAAGGAGCTGTCGGATGGCATAGGTGCAGCCAAGACATTGCA GGTGTTGGATTTGAGCATGAATGGACTTTCGCTGAAAGAAGTGGAAGCATTGTATGGTTCGTGGAGATTGGGGAAGAAGGGTTCTTCAGCTCAGAAGCAC GTTAAAGACCAAATAGTCCATTTCTCAGTAGCAGGAAAAAAGTGTTGCATGAAGCCGTGCTGCAGAAGGGAATGA
AA sequence Show only first row Show all	>Lus10037327 pacid=23152451 polypeptide=Lus10037327 locus=Lus10037327.g ID=Lus10037327.BGIv1.0 annot-version=v1.0 MAKDDGKLSASKRAYKTAQEEGNRQDEARWANVIGNILKDRGEYVEALRWMRKDYDISVRYLPEKDLLATCQSIGELYLRLENFSDALVYQKRHLELANS ANNLVEQQRASTQLGRSYHAMFLRSDDDYYAVKNAKKYFKLSMKLAETLKANPPSNNSSFLKEYIDAHNNIGMLELDLDNLELATDILMKGLQICDEEEV DENDDGRSRLHHNLGNCYIELRKWEKAREHIEKDILICKKIGQCQGEAKGFINLGELHYRVQKYEDAVLCYQMALKLAKSMEDEDALVKQIDQNIMTIRE AMKVMDELKIEEQNLKKLTRDMIAVRGTARERKSLLKLYTKLDHLIEKSGTISAWLKHREFAKQKKEVAAQLCDKIKLNDSYLALGESYRKIRDFNKAYK WFSKAWEGSKLIGYLEGQALAKINIGDVLDCRGDWSGALATFEEGYRIAVEANVPSAQLQALENMHYSQMMRFQNAEEARRLQHELEKLKQFGGREAEKN NLAADHCSETDTEDDYLSDGSFSNPCSPNSGDSLLRRSTSSASIEEFKDDTPLISLLKSTKRLTRKTDANIKEPYVSNNPNEASPICSAIPTTSQQSVGR KRVRVILSDDENETNEGVDYLERKLPTTPVEVVATSDETRRRNIGACSSSEIRDLSTDGSKYATDSSNQVKDEDVAFLYKSPSAKGRAITFNIANDQISF EAGLSLAFSGLSIESLSVEVACLYYLQLPTDKRCQGLLPIIQHLKHSGQILESLDDLEALNNDAGKIFIEVSINGWIQKRLMKLYIDCCGELHETPDIKL LKKLYISEVEDEVIASECGLQDISIAPLLNALQTHKTVLMLDLSHNLLARSRISINVVHCLMLGSRRPKSYFLAGNGTVEKLEQIFTTGQKHGDLSLDLH CNRFGPTALLQICECPVLFSRLEVLNISGNRLTDACGSYLSTILGKCKDANSLSFAALYSLNIERCSITSRTIQKVADAIHSGSVLAQLSIGYNSLSGTS IINLLMKLSTLNSFTELNLSGLKLNKPVIDSLCELTKSSCLTNLRVGSTGIGNEWALQLTDSLSSGSQEFLKLDLSYCTLTSTFVQTLTTNSSLACCILE LNLEGNPILPEGGSALVSLVKQPACSLRLLILNKCQLGLPLILQLVQALAENDQLEELHVAENDDLQKLALSTDQQTATIASHSEAADHEGRLVDCQLNM ESDGLEVADSEDSTRVEAAAIRSELNDTCTSSSWGKKKKKKNEDESIISAQIVKELSDGIGAAKTLQVLDLSMNGLSLKEVEALYGSWRLGKKGSSAQKH VKDQIVHFSVAGKKCCMKPCCRRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18730		BRU1, MGO3, TSK	TONSOKU, MGOUN3, BRUSHY1, tetr...		Lus10037327 [exp]	0	1
AT1G06590			unknown protein		Lus10043409 [exp]	2.2	0.9309
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Lus10009369 [exp]	3.2	0.9216
AT2G36200			P-loop containing nucleoside t...		Lus10017016 [exp]	3.5	0.9400
AT4G16970			Protein kinase superfamily pro...		Lus10004357 [exp]	4.5	0.9383
AT3G18520		HDA15, ATHDA15	histone deacetylase 15 (.1.2)		Lus10024919 [exp]	4.9	0.9258
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10019031 [exp]	5.8	0.9103
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Lus10017491 [exp]	8.3	0.9371
AT3G10180			P-loop containing nucleoside t...		Lus10010441 [exp]	9.5	0.9300
AT3G10180			P-loop containing nucleoside t...		Lus10012103 [exp]	11.7	0.9322
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10035991 [exp]	17.3	0.9092

Compare expression of checked genes

Lus10037327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.